Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 613 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  269 bits (688), Expect = 2e-76
 Identities = 135/269 (50%), Positives = 183/269 (68%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  F+G  + PFSI PN  YL+LS RH+EA+ HL  GLG+ GGF +LTGEVGTGKTTV+
Sbjct: 1   MYKAFYGLKDNPFSIAPNPTYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  LP  T    ILNP  ++LELL  +CDE ++ Y +  +LK+LT ++  FLL  H 
Sbjct: 61  RCLLRQLPDTTDTAFILNPALTELELLATLCDELKIPYGESPSLKRLTDLISGFLLKNHN 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
            G   +L+IDEAQHL  +VLEQLRLLTNLET++ KLL+V+LIGQPELQ+ L+  +LRQLA
Sbjct: 121 AGRNTVLIIDEAQHLKAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVCDA 240
           QRIT RYHLLPL  E+   Y++ R++ A     LFN  A + + + + GIPR+INL+C+ 
Sbjct: 181 QRITARYHLLPLTAEEVGLYVQHRLQVAGRFEPLFNAGAIKALHKASGGIPRIINLLCER 240

Query: 241 ALKQAYQAGEPTLSLARIKLACQEVMSFQ 269
           AL   +      ++   ++ A  EV+  +
Sbjct: 241 ALMAGFAQSRVPINKQMVRQAAVEVLGLE 269



 Score = 88.6 bits (218), Expect = 6e-22
 Identities = 60/207 (28%), Positives = 96/207 (46%), Gaps = 5/207 (2%)

Query: 327 EQRVFPQALRSALLNATSSEHALETLYAVWGYQASVLEQFCQTQADAVLWCEEQTGDWST 386
           + +V  + L  A+  + S + A   L+  WG         C++  +  L C +Q G W  
Sbjct: 406 QAKVRERVLTDAVAQSRSLDTAYAALFGAWGLAPIKDLSPCESAREQGLSCFQQQGTWFN 465

Query: 387 LQTYDLPAVLTLMMDDV--PTYAVLYRLTGDQAELLVGGERYRIARQWLEPLWNGQFSLL 444
           L   + PAV   MMDD     +  +    GD+  + +  ++  + R W    + G F L 
Sbjct: 466 LVKLNYPAV-AYMMDDAGGEFFVTVIERDGDELLVQLAEQQLWVNRDWFNRHFTGTFELF 524

Query: 445 WQASFSRTLKQGMQGA--DVALLESKLAQVLGEPERPREQFDKDLSRKVELFQRWQNMHV 502
           WQA      + G+     +V  LE+ LA+V     R   +FD +L  +++LFQR   +  
Sbjct: 525 WQAPVYSPREIGIASPQPEVQWLENGLAKVDKITPRLVNEFDTELENRLKLFQRQHGLKA 584

Query: 503 DGIAGRQTLRRLELLTQQQAPSLKEEG 529
           DGIAG QTL++L L    + P L + G
Sbjct: 585 DGIAGSQTLQQLNLYLSNEGPRLVQGG 611