Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., MSHA biogenesis protein MshM (RefSeq) from Shewanella amazonensis SB2B

 Score =  194 bits (493), Expect = 4e-54
 Identities = 110/250 (44%), Positives = 147/250 (58%), Gaps = 1/250 (0%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL  FG  E+PF++ PN  + +    H EA+  LQ  L  G GF  +TGEVGTGKT + 
Sbjct: 1   MYLQHFGLREMPFALTPNTGFFFALAPHAEALQVLQTALQTGEGFIKVTGEVGTGKTLIL 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  LP   R   + NP  S  EL  A+  E  + Y      ++LT ++   L+A  A
Sbjct: 61  RKLLNDLPAPLRCAYLPNPCLSPNELRWALALELGLKYSANIDQQQLTSLIQHQLMALAA 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
            G  V+L++DEAQ L  + LE LRL TNLETES KLL+V+L GQPEL E+L  P+LRQL 
Sbjct: 121 HGHSVVLILDEAQALPQESLETLRLFTNLETESRKLLQVVLFGQPELDERLASPELRQLR 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQAS-GNPELFNRKACQWIAEQTHGIPRLINLVCD 239
           QRIT  Y L PLN ++   Y++ R++ A   +  LF+  A   IA  + GIPRLIN++  
Sbjct: 181 QRITFSYRLRPLNRQEIEAYVQHRLKVAGLSDTGLFDSAAIAAIARASRGIPRLINILAH 240

Query: 240 AALKQAYQAG 249
            AL   +  G
Sbjct: 241 KALMLGFGEG 250