Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., ATPase (NCBI) from Rhodospirillum rubrum S1H

 Score =  135 bits (339), Expect = 3e-36
 Identities = 84/280 (30%), Positives = 137/280 (48%), Gaps = 5/280 (1%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL+F+G    PF + P+  + + +  H  A  +L  GL  G GF ++TG+VG GKTT+ 
Sbjct: 1   MYLDFYGLHAHPFQLTPDPAFFFGANGHTRAKSYLMFGLSQGEGFVVVTGDVGAGKTTLL 60

Query: 61  RAILASLPGKT-RAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEH 119
             +L SL  ++ R   +     S  +    +   F ++ P   +     + +  FL    
Sbjct: 61  SHMLRSLSDRSIRVARLSTTQLSADDTARVVARAFGLAEPAHPSKGAWLEAIEVFLTQVR 120

Query: 120 AQGIQVLLMIDEAQHLAPDVLEQLRLLTNLE-TESHKLLKVLLIGQPELQEKLRLPQLRQ 178
           A G + +L++DE Q++    LE+LR+L NL   + H  L+ +L+GQP+ +  L  P L Q
Sbjct: 121 AAGERCVLIVDEVQNMGFAALEELRMLGNLGIDDGHSALQTILVGQPQFRNTLAGPSLDQ 180

Query: 179 LAQRITGRYHLLPLNEEQTADYIRFRIEQAS--GNPELFNRKACQWIAEQTHGIPRLINL 236
           L QRI    HL P+  E+   Y+R+R+ QA   G+P  F       +   + G+PR IN+
Sbjct: 181 LRQRIVASCHLGPIEPEEVGHYMRYRLTQAGWRGDPS-FEEAVFPAVYRHSGGLPRRINI 239

Query: 237 VCDAALKQAYQAGEPTLSLARIKLACQEVMSFQSSVYQVA 276
           +C   L   +      L    ++    E+ +    V  VA
Sbjct: 240 LCSRLLLAGFLQERHDLRAQDVEEVAAELEAEAGEVIGVA 279