Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., MSHA biogenesis protein MshM (NCBI) from Rhodospirillum rubrum S1H

 Score = 77.8 bits (190), Expect = 5e-19
 Identities = 71/262 (27%), Positives = 108/262 (41%), Gaps = 9/262 (3%)

Query: 6   FGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVARAILA 65
           FGF   PF         Y     Q  +  L A L    G   + GE G GK+ +   + A
Sbjct: 11  FGFHRHPFPAEAGLELAYAGNDSQAPVRRLLARLTRYAGPVTVVGEAGLGKSYLCDWVAA 70

Query: 66  SLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHAQGIQV 125
            L  +     +         LL  +    ++   + A      +VL   LLA    G + 
Sbjct: 71  LLESRALVVRVNATDLGGARLLPLVAQALDLDPERPAGTSP--RVLTARLLALRVSGRRA 128

Query: 126 LLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLAQRITG 185
           +L++D A  L+   LE LR L  LET   +LL+V L G+P L+E  RL  L QLA+R+  
Sbjct: 129 VLLVDGADALSDGDLEDLRRLDALETARGRLLRVALFGRPGLRE--RLQTLPQLARRLGP 186

Query: 186 RYHLLPLNEEQTADYIRFRIEQASGNP----ELFNRKACQWIAEQTHGIPRLINLVCDAA 241
              L P+       Y+  R+   S +P     +F   A + +     G+P  ++ +  AA
Sbjct: 187 GVRLTPMTRSDLTSYLDHRL-AVSRDPLWIDPVFTPAARRRLLRLARGVPGDLDRLASAA 245

Query: 242 LKQAYQAGEPTLSLARIKLACQ 263
           L  A   G  T+    +  A +
Sbjct: 246 LYLAAGEGAATVETGHMGTAAR 267