Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 587 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  340 bits (871), Expect = 1e-97
 Identities = 212/578 (36%), Positives = 308/578 (53%), Gaps = 55/578 (9%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  F+G  + PFSI PN  YL+LS RH+EA+ HL  GLG+ GGF +LTGEVGTGKTTV+
Sbjct: 1   MYKAFYGLSDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  LP  T    ILNP+ ++LELL  +CDE  V Y +  TLK+LT  L +FLLA H 
Sbjct: 61  RCLLNQLPENTDTAFILNPSLTELELLATLCDELGVHYGESPTLKQLTDKLSQFLLANHE 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
           +G   +L+IDEAQHL  +VLEQLRLLTNLET++ KLL+V+LIGQPELQ+ L+  +LRQLA
Sbjct: 121 KGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQQLLKRQELRQLA 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVCDA 240
           QRIT RYHLLPL +++ A Y++ R++ A  +  LF+R A + + + + GIPRLINL+C+ 
Sbjct: 181 QRITARYHLLPLTQQEIALYVQHRLQVAGRHEPLFHRSAIKTLHQYSGGIPRLINLLCER 240

Query: 241 ALKQAYQAGEPTLSLARIKLACQEVM---------------------SFQSSVY------ 273
           AL   Y   +  +    ++ A  EV+                     +F  + Y      
Sbjct: 241 ALMAGYAQSKVPIDANMVRTAASEVLGEEIKQRKLLWPATAATLILATFAGAFYFFNLQG 300

Query: 274 --QVASAKPPVPKLSYLSSALGGIALA----VVLAWQLPPQLDRVMQHYFPLPEVVPPTE 327
              +A A       +  + A  G   A       A Q      + +Q      +  P T+
Sbjct: 301 HGGIAQANTDQANTAQANMAQTGAVQANEPSATGAQQANQNHSQAVQ-----TQTQPQTQ 355

Query: 328 QRVFPQALRSALLNATSSEHAL----------ETLYA----VWGYQASVLEQFCQTQADA 373
             +  + +  +  + ++ +  L          +T YA    +W     V    CQ+    
Sbjct: 356 TNLASRQVEESNASLSADQRILRQAINQSRSIDTAYAAILGLWDKAPYVGLTACQSAKQQ 415

Query: 374 VLWCEEQTGDWSTLQTYDLPAVLTLMMD-DVPTYAVLYRLTGDQAELLVGGERYRIARQW 432
            L C +Q G+W +L   + PAV+ L  +   P Y  +    G+Q  L +  ++  + R W
Sbjct: 416 GLDCFQQQGNWHSLVRLNYPAVVYLQDERGEPFYGTVVSRQGEQLLLQLAEQQLWVDRDW 475

Query: 433 LEPLWNGQFSLLWQASF--SRTLKQGMQGADVALLESKLAQVLGEPERPREQFDKDLSRK 490
               + G F LLWQA     + + +G   A +  LE+ LAQ+  +P R  + FD +L + 
Sbjct: 476 FTRHFAGTFELLWQAPSYQPKEIGRGSAPAQIQWLENALAQIQNKPARLVDYFDAELEQS 535

Query: 491 VELFQRWQNMHVDGIAGRQTLRRLELLTQQQAPSLKEE 528
           +  FQR   +  D IAG QTL +L L    + P L+E+
Sbjct: 536 LMDFQRQHGLRADAIAGSQTLVQLNLYLSDKGPRLQEQ 573