Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., MSHA biogenesis protein MshM (RefSeq) from Shewanella loihica PV-4

 Score =  189 bits (480), Expect = 1e-52
 Identities = 111/274 (40%), Positives = 152/274 (55%), Gaps = 1/274 (0%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL  F   + PFS+ PN  + +    H EA+  LQ  L  G GF  +TGEVGTGKT + 
Sbjct: 1   MYLQHFHLAQPPFSLTPNTGFFFGLAPHVEALQVLQTALQTGEGFIKVTGEVGTGKTLIC 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  +P +     + NP  S  EL  A+  E  + Y      ++LT ++ + L+A  A
Sbjct: 61  RKLLNDIPERFHCAYLPNPYLSPSELRWALALELGLKYSADLDQQRLTSLIQQQLIALSA 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
            G  ++L++DEAQ L  + LE LRL TNLETES KLL+V+L GQPEL  +L+ PQ RQL 
Sbjct: 121 HGHSIVLVLDEAQALPDESLEALRLFTNLETESRKLLQVVLFGQPELDTRLQQPQFRQLR 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPE-LFNRKACQWIAEQTHGIPRLINLVCD 239
           QRIT  Y L P+  ++T  Y   R+E A    E LF  +  + IA    GIPRLIN++  
Sbjct: 181 QRITFSYQLRPMTADETRAYQAHRLEVAGYRGEGLFGARESRRIARAARGIPRLINILSH 240

Query: 240 AALKQAYQAGEPTLSLARIKLACQEVMSFQSSVY 273
            AL  AY  G   +SL  +K A  +       ++
Sbjct: 241 KALLLAYGEGADKVSLRHVKGAIADTQDADRGLF 274