Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 270 a.a., Conserved hypothetical protein from Mycobacterium tuberculosis H37Rv

 Score =  105 bits (262), Expect = 2e-27
 Identities = 82/267 (30%), Positives = 128/267 (47%), Gaps = 9/267 (3%)

Query: 3   LNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVARA 62
           ++++GF  +PF        L+    H EA+  +   + D     ++TGEVG GKT   RA
Sbjct: 6   ISYYGFSRMPFGRDLAPGMLHRHSAHNEAVARIGWCIADRR-IGVITGEVGAGKTVAVRA 64

Query: 63  ILASLPGKTRAGMIL-NPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLH--EFLLAEH 119
            LASL       + L +PT      ++ I      S   +      T      + L AE 
Sbjct: 65  ALASLDRSRHTIIYLPDPTVG----VQGIHHRIVASLGGQPLTHHATLAPQAADALAAEQ 120

Query: 120 AQ-GIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQ 178
           A+ G   +++++EA  L  D LE LRLLTN + +S      LLIGQP L+ +++L  L  
Sbjct: 121 AERGRTPVVVVEEAHLLGYDQLEALRLLTNHDLDSSSPFACLLIGQPTLRRRMKLGVLAA 180

Query: 179 LAQRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVC 238
           L QRI  RY + P+ +  T  Y+R  ++ A  +  LF+  A   I + + G PR +N + 
Sbjct: 181 LDQRIGLRYAMPPMTDTNTGSYLRHHLKLAGRDDALFSDDAIGLIHQTSRGYPRAVNNLA 240

Query: 239 DAALKQAYQAGEPTLSLARIKLACQEV 265
             AL  A+ A +  +  +  + A  EV
Sbjct: 241 LQALVAAFAADKAIVDESTTRTAIAEV 267