Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., MSHA biogenesis protein MshM (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  191 bits (485), Expect = 3e-53
 Identities = 107/260 (41%), Positives = 153/260 (58%), Gaps = 1/260 (0%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL  FG  + PFS+ PN  + +    H EA+  LQ  L  G GF  +TGEVGTGKT + 
Sbjct: 1   MYLKHFGLGQAPFSLTPNTGFFFGLSPHVEALQVLQTALQTGEGFIKVTGEVGTGKTLIC 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R ++  LP       + NP  +  EL  A+ +E  + Y  +   ++LT ++ + LLA   
Sbjct: 61  RKLINELPQGFHCAYLPNPYLTPAELRWAVANELGLKYTSEIDQQQLTGLIQQQLLALST 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
            G  ++L++DEAQ L  + LE LRL TNLETES KLL+V+L GQPEL E+L+    RQL 
Sbjct: 121 HGHAIVLVLDEAQALPDESLEALRLFTNLETESRKLLQVVLFGQPELDERLKRQAFRQLR 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQAS-GNPELFNRKACQWIAEQTHGIPRLINLVCD 239
           QRIT  Y+L PL  ++T  YIR+R+  A      LF+ K  + IA+ + GIPRLIN++  
Sbjct: 181 QRITFSYNLRPLTWDETDAYIRYRLAVAGHAGQALFSPKITRKIAQASRGIPRLINILAH 240

Query: 240 AALKQAYQAGEPTLSLARIK 259
            AL  ++  G   + ++ +K
Sbjct: 241 KALMLSFGEGATQVRMSHLK 260