Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 554 a.a., general secretion pathway protein a (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  358 bits (920), Expect = e-103
 Identities = 218/560 (38%), Positives = 301/560 (53%), Gaps = 40/560 (7%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  F+G  + PFSI PN  YL+LS RH+EA+ HL  GLG+ GGF +LTGEVGTGKTTV+
Sbjct: 1   MYKAFYGLSDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  LP  T    ILNP+ ++LELL  +CDE ++SY +  TLK+LT  L  FLLA H 
Sbjct: 61  RCLLGQLPDNTDTAFILNPSLTELELLATLCDELKISYGENPTLKQLTDHLSRFLLANHE 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
           +G + +L+IDEAQHL  +VLEQLRLLTNLET++ KLL+V+LIGQPELQ  L+  +LRQLA
Sbjct: 121 KGRKTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQLLLKRQELRQLA 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVCDA 240
           QRIT RYHLLPLNE++   Y+  R++ A     LF RKA + + + + GIPRLINL+C+ 
Sbjct: 181 QRITARYHLLPLNEDEITLYVLHRLQVAGRFEPLFTRKAIKVLHKYSGGIPRLINLLCER 240

Query: 241 ALKQAYQAGEPTLSLARIKLACQEVMSFQSSVYQVASAKPPVPKLSYLSSALGGIALAVV 300
           AL   Y   +  +    ++ A  EV+            KP   K  + S+    + L   
Sbjct: 241 ALMAGYAQSKVPIDHHMVRQAAAEVL---------GEEKPSQNKFLWPSAIAAALVLTFG 291

Query: 301 LAWQL-----------------PPQL----DRVMQHYFPLPEVVPPTEQRVFPQA----- 334
           +++ L                 P Q     + V Q    L    P       P A     
Sbjct: 292 VSYWLFTDHAVVATVANENVTQPKQTVIAENAVQQSQTALTNTAPAITLAQTPAAPDPNL 351

Query: 335 --LRSALLNATSSEHALETLYAVWGYQASVLEQFCQTQADAVLWCEEQTGDWSTLQTYDL 392
             L+ A+  +   + A   L+ VWG         CQ+  +  L C +Q G+W +L   + 
Sbjct: 352 RVLQEAIKQSRQIDTAFAGLFNVWGKVPFKGLTACQSAFEQGLSCYQQQGNWMSLTRLNY 411

Query: 393 PAVLTLMMDDVPT-YAVLYRLTGDQAELLVGGERYRIARQWLEPLWNGQFSLLWQASF-- 449
           PAV+ L+ D+    Y  +  + G+Q  + +G ++  + R W    ++G F +LWQA    
Sbjct: 412 PAVVYLVDDNQQDFYGAVIAVDGEQLLMQLGEQQLWVERTWFNQHFSGTFEILWQAPNLP 471

Query: 450 SRTLKQGMQGADVALLESKLAQVLGEPERPREQFDKDLSRKVELFQRWQNMHVDGIAGRQ 509
              + Q      +  LE+ LA V   P R   QFD  L   ++ FQ    +  DGIAG Q
Sbjct: 472 MMEISQKSSPGQLQWLENALAHVAKRPSRRVSQFDLKLENDLKAFQSQHGLKADGIAGNQ 531

Query: 510 TLRRLELLTQQQAPSLKEEG 529
           TL RL L    Q P L + G
Sbjct: 532 TLVRLNLYLSDQGPRLTDNG 551