Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., conserved domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  191 bits (485), Expect = 5e-53
 Identities = 106/262 (40%), Positives = 165/262 (62%), Gaps = 14/262 (5%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  FFGF   PF ++PN  +LY S+ +++A  +L+ G+ D  GF ++TGEVG GKTT+ 
Sbjct: 1   MYTAFFGFRVKPFDLLPNPDFLYPSRAYRKASAYLEYGVRDRAGFILITGEVGAGKTTLI 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R++L    G      + N +    +L+  I D+F +    +  +  L   L+ FL+ ++A
Sbjct: 61  RSLLKRSLGDVLISKVFNTSVDAEQLVAMINDDFGLETDGRDKVAMLRD-LNTFLIEQYA 119

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
           +  + +L+IDEAQ+L P+VLE++R+L+NLET++ KLL+++L+GQPEL+E++R PQL QL 
Sbjct: 120 ERRRPVLIIDEAQNLTPEVLEEVRMLSNLETDNAKLLQIILVGQPELRERIRSPQLLQLR 179

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQW----IAEQ---THGIPRL 233
           QRI  + HL PL  E+  +Y+ +R+E+A       NR A  W    +AE    T GIPRL
Sbjct: 180 QRILVQCHLEPLTREEVEEYVLYRLERAG------NRDALHWEEGVMAEMHRATRGIPRL 233

Query: 234 INLVCDAALKQAYQAGEPTLSL 255
           +N++    L  AY AG  ++SL
Sbjct: 234 VNILGSYVLLDAYAAGRRSISL 255