Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 586 a.a., conserved domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  108 bits (269), Expect = 7e-28
 Identities = 94/322 (29%), Positives = 144/322 (44%), Gaps = 25/322 (7%)

Query: 2   YLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVAR 61
           YL   G  + PFS  P+    Y +  H+  +  L+  +    G  ++ G+VGTGK+T++R
Sbjct: 37  YLEMLGLAQEPFSTSPDPLAYYRAPEHEHCLHRLEVSIRLKRGLNVVIGDVGTGKSTLSR 96

Query: 62  AILASLPGKTRA--GMILNPTFSDL-ELLEAIC-----DEFEVSYPKKATLKKLTQVLHE 113
            +L +L G+      +IL+P F    E    IC          + P++  ++ +   L  
Sbjct: 97  CLLRALDGQEDIIPHLILDPGFESADEFARYICRLLADGPVPDTLPRRDCIEAIQNAL-- 154

Query: 114 FLLAEHAQGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRL 173
           F LA   +G  VLL IDE Q LAPD LE LR L N ET + KLL++++ GQ EL+E   +
Sbjct: 155 FSLAVE-RGRIVLLCIDEGQKLAPDCLEVLRELLNYETNTEKLLQIVIFGQRELEEV--I 211

Query: 174 PQLRQLAQRITGRYHLLPLNEEQTADYIRFRIEQASG--NPELFNRKACQWIAEQTHGIP 231
             L     RI     L PL+  +T   +R R+  A G     LF   A   +   T G P
Sbjct: 212 DGLPNFKDRINEYLVLRPLDRRETIRLVRHRLRLAGGPAGERLFTLGALLAVHRATRGYP 271

Query: 232 RLINLVCDAALKQAYQAGEPTLSLARIKLACQEVMSFQSSVYQVASAKPPVPKLSYLSSA 291
           R I  +C   +       +P       ++  + V  F      +   + P  +   L  A
Sbjct: 272 RRIMRLCHQLVMTLLITNKP-------RITARSVRDFLQRDKALGPKRTPYLR---LIGA 321

Query: 292 LGGIALAVVLAWQLPPQLDRVM 313
            G  A  V L    P Q+++ +
Sbjct: 322 TGVAAALVALFVMRPAQVEQTL 343