Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 749 a.a., AAA ATPase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 89.4 bits (220), Expect = 4e-22
 Identities = 83/308 (26%), Positives = 137/308 (44%), Gaps = 22/308 (7%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL  F   + PF+  P+  +L  S +HQ  +  +     +    ++L G++G GK+T+A
Sbjct: 1   MYLEHFNLRKRPFATSPDPAFLIWSAQHQSVLDAVLDTRPEAPPVSILLGDIGLGKSTLA 60

Query: 61  RAILASLPGKT--RAGMILNPTFSDLELLEAICDEFE---VSYPKKATLKKLTQVLHEFL 115
            A+   L  +   R G+I     +  E +       E   +    +A   +L     E L
Sbjct: 61  HALQERLIAEQGGRVGLISVQLNTAEEAIAHALRSLEGQALDGSAEAARARL-----EAL 115

Query: 116 LAEHAQG-IQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLP 174
           LA+   G    +L++DEAQ L+      L  L   +TE     ++LL+G   L+ +L  P
Sbjct: 116 LADGTDGGCATVLIVDEAQSLSDAAASALLSLVR-DTEGAVRCRLLLVGLGALEARLASP 174

Query: 175 QLRQLAQRITGRYHLLPLNEEQTADYIRFRIEQASG-NPELFNRKACQWIAEQTHGIPRL 233
            L      +     L P+++++ A Y+  R+ +A    P+LF  +A   I     G+PRL
Sbjct: 175 ALEPFEAELRPPLRLRPVSKDEAAAYVSGRLARAGHVGPDLFTPEAVAVIHRHAEGVPRL 234

Query: 234 INLVCDAALKQAYQAGEPTLSLARIKLACQEV------MSFQSSVYQVASAKPP-VPKLS 286
           IN  CD  L  A Q  +  +    ++   ++V      MSF  +   V  AKPP  P+  
Sbjct: 235 INKACDLVLLTAAQEDKRVIEADLVREILRDVSLASGAMSFPGAAGAV--AKPPRAPEAQ 292

Query: 287 YLSSALGG 294
             +   GG
Sbjct: 293 AATGRAGG 300