Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 309 a.a., MSHA biogenesis protein MshM (RefSeq) from Shewanella sp. ANA-3

 Score =  195 bits (495), Expect = 2e-54
 Identities = 112/265 (42%), Positives = 155/265 (58%), Gaps = 1/265 (0%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MYL  FG  + PFS+ PN  + +    + EA+  LQ  L  G GF  +TGEVGTGKT + 
Sbjct: 1   MYLKHFGLSQTPFSLTPNTGFFFGLSPYVEALQVLQTALQTGEGFIKVTGEVGTGKTLIC 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R ++  LP       + NP  +  EL  A+ +E  + Y  +   ++LT ++ + LLA  A
Sbjct: 61  RKLINELPQGFHCAYLPNPYLTPAELRWAVANELGLKYTSEIDQQQLTGLIQQQLLALSA 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
            G  ++L++DEAQ L  + LE LRL TNLETES KLL+V+L GQPEL E+L+    RQL 
Sbjct: 121 HGHAIVLVLDEAQALPDESLEALRLFTNLETESRKLLQVVLFGQPELDERLKRQAFRQLR 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQAS-GNPELFNRKACQWIAEQTHGIPRLINLVCD 239
           QRIT  Y L PL  ++T  YIR+R+  A      LF  K  + IAE + GIPRLIN++  
Sbjct: 181 QRITFSYSLRPLTWDETDAYIRYRLAVAGYAGQALFGPKLTRKIAEASRGIPRLINILAH 240

Query: 240 AALKQAYQAGEPTLSLARIKLACQE 264
            AL  ++  G   + +A IK A Q+
Sbjct: 241 KALMLSFGEGATQVRMAHIKGAIQD 265