Pairwise Alignments

Query, 529 a.a., general secretion pathway protein GspA from Vibrio cholerae E7946 ATCC 55056

Subject, 562 a.a., peptidoglycan binding domain-containing protein (RefSeq) from Shewanella sp. ANA-3

 Score =  358 bits (919), Expect = e-103
 Identities = 217/561 (38%), Positives = 309/561 (55%), Gaps = 34/561 (6%)

Query: 1   MYLNFFGFDELPFSIVPNARYLYLSQRHQEAIVHLQAGLGDGGGFAMLTGEVGTGKTTVA 60
           MY  F+G  + PFSI PN  YL+LS RH+EA+ HL  GLG+ GGF +LTGEVGTGKTTV+
Sbjct: 1   MYKAFYGLSDNPFSIAPNPHYLFLSDRHREALAHLTYGLGETGGFVLLTGEVGTGKTTVS 60

Query: 61  RAILASLPGKTRAGMILNPTFSDLELLEAICDEFEVSYPKKATLKKLTQVLHEFLLAEHA 120
           R +L  LP  T    ILNP+ ++LELL  +CDE ++SY +  TLK+LT  L  FLLA H 
Sbjct: 61  RCLLGQLPDHTDTAFILNPSLTELELLATLCDELKISYGENPTLKQLTDHLSRFLLANHE 120

Query: 121 QGIQVLLMIDEAQHLAPDVLEQLRLLTNLETESHKLLKVLLIGQPELQEKLRLPQLRQLA 180
           +G   +L+IDEAQHL  +VLEQLRLLTNLET++ KLL+V+LIGQPELQ  L+  +LRQLA
Sbjct: 121 KGRNTVLIIDEAQHLRAEVLEQLRLLTNLETDTKKLLQVILIGQPELQLLLKRQELRQLA 180

Query: 181 QRITGRYHLLPLNEEQTADYIRFRIEQASGNPELFNRKACQWIAEQTHGIPRLINLVCDA 240
           QRIT RYHLLPLNE++ A Y+  R++ A     LF RKA + + + + GIPRLINL+C+ 
Sbjct: 181 QRITARYHLLPLNEDEIALYVLHRLQVAGRFEPLFTRKAIKVLHKYSGGIPRLINLLCER 240

Query: 241 ALKQAYQAGEPTLSLARIKLACQEVMS----------FQSSV-----------YQVASAK 279
           AL   Y   +  +    ++ A  EV+           + S++           Y + +  
Sbjct: 241 ALMAGYAQSKVPIDHHMVRQAAAEVLGEEEPQPNKLLWPSAIAAALVVAFGVSYWLFTES 300

Query: 280 PPVPK-----LSYLSSALGGIALAVVLAWQLPPQLDRVMQHYFPL---PEVVPPTEQRVF 331
           P V       ++  + A   +  A +    + P+         P+   P+ +   +  V 
Sbjct: 301 PAVANVVNSPVTQANQATPEVTQASIQDKSIQPEQTLAATQSAPVASEPQTLAAPDPSV- 359

Query: 332 PQALRSALLNATSSEHALETLYAVWGYQASVLEQFCQTQADAVLWCEEQTGDWSTLQTYD 391
            + L+ A+  + S + A   L+ VWG         CQ+  +  L C +Q G+W +L   +
Sbjct: 360 -RVLQEAIKQSRSIDTAFAGLFNVWGKVPFKGLTACQSALEQGLSCYQQQGNWMSLTRLN 418

Query: 392 LPAVLTLMMDDVPT-YAVLYRLTGDQAELLVGGERYRIARQWLEPLWNGQFSLLWQASFS 450
            PAV+ L+ D+    Y  +  +  DQ  + +G ++  + R W    ++G F +LWQA   
Sbjct: 419 YPAVVYLVDDNQQDFYGAVIAVDADQLLMQLGEQQLWVDRAWFNQHFSGTFEILWQAPNL 478

Query: 451 RTLK--QGMQGADVALLESKLAQVLGEPERPREQFDKDLSRKVELFQRWQNMHVDGIAGR 508
             L+  Q      +  LE+ LA V   P R   QFD  L   ++ FQ    +  DGIAG 
Sbjct: 479 PMLEISQKSSPGQLQWLENALAHVANRPSRRVSQFDLKLENDLKAFQSQHGLKADGIAGN 538

Query: 509 QTLRRLELLTQQQAPSLKEEG 529
           QTL RL L    Q P L ++G
Sbjct: 539 QTLVRLNLYLSDQGPRLTDKG 559