Pairwise Alignments

Query, 256 a.a., general secretion pathway protein GspB from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., general secretion pathway protein B (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 45/142 (31%), Positives = 72/142 (50%), Gaps = 16/142 (11%)

Query: 125 ATIQASGQQSASNKALGDLDLTQL--SPELALRVQAIMRDQSSEPA--TPST-PTSAAVS 179
           AT++A  QQ  +      LD TQ     EL    Q  ++D     A  TP T P    + 
Sbjct: 228 ATLEALRQQVNAAAVDVGLDTTQSRKDDELVATFQDALKDVEYVNAAKTPVTEPKLDPIP 287

Query: 180 LTQHSD--RYQGQLPA--------LNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKL 229
            T++ D  +Y GQLPA         N   H +S++  +RW+ V+G E +EGDM+  ++K+
Sbjct: 288 KTENDDIPKY-GQLPAGLQLQVPEFNIVAHVYSTDASQRWLNVDGAELQEGDMIVGKLKI 346

Query: 230 ESIKPQSSVIIFGGEEIEIPAL 251
            +I+P+  V+   G +  +PA+
Sbjct: 347 IAIRPRDIVLDIQGTQFRVPAI 368