Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  189 bits (480), Expect = 2e-52
 Identities = 114/296 (38%), Positives = 174/296 (58%)

Query: 102 AARVMLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDA 161
           AA   L     L+   + +    +S+ I    +DE G +   ++    +   ++    D+
Sbjct: 191 AAATALLPLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLETEAGAMVGRIADS 250

Query: 162 SQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENA 221
           S++L+     +  +M  +  SA  +  E D +ATA+ +MS++VQ VA +AQ  + +   A
Sbjct: 251 SRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALNAQRTAEVAARA 310

Query: 222 SQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLA 281
             +A  G++ V  T S ++ L+ DI  +A+ ++Q+E     IS V+  I  I+EQTNLLA
Sbjct: 311 DSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVIHGIAEQTNLLA 370

Query: 282 LNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSV 341
           LNAAIEAARAGE GRGFAVVADEVR LA RT  AT +IQ MI  LQ+ A  AV++M++S 
Sbjct: 371 LNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTGAREAVDVMQRSR 430

Query: 342 VQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVR 397
            QA   V     A   L GI ++V  ++ M+ QIAAA  QQS+V EE+++++ ++R
Sbjct: 431 EQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEISQSIVSIR 486