Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 528 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  202 bits (514), Expect = 2e-56
 Identities = 116/295 (39%), Positives = 178/295 (60%)

Query: 103 ARVMLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDAS 162
           A + L   Q L++  + +    + + I    +DEYG +A  ++    +   ++    DAS
Sbjct: 194 AYLALAPLQQLAEQARQVGDNPVGQLIYAGRRDEYGQIAFAMKMLETEAGAMVGRIGDAS 253

Query: 163 QELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENAS 222
           ++L+     +  +M  +  SA  + +E DQ+ATA+++M+++VQ VA +AQ  +     A 
Sbjct: 254 RQLSQHAHELLGAMDSSTQSASRQQSETDQVATAINQMAASVQEVANNAQRTAEAASRAD 313

Query: 223 QQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLAL 282
            +  TG + V  T + + +L++DI  +   ++++E     I+ V+  IR I+EQTNLLAL
Sbjct: 314 SETATGTEVVNRTGAAIGQLAQDIQQAGDVIHELEAHSNDITKVLDVIRGIAEQTNLLAL 373

Query: 283 NAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVV 342
           NAAIEAARAGE GRGFAVVADEVRNLA RTQ +T EI  MI  LQ  A  AV +M++S  
Sbjct: 374 NAAIEAARAGEQGRGFAVVADEVRNLASRTQQSTQEINGMIGALQGGARQAVEVMQRSRE 433

Query: 343 QAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVR 397
           QA   VE    A   L GI ++V  +++M+ QIAAA  QQS V+E +N+N+ ++R
Sbjct: 434 QAMQSVEHAAQAARSLHGINSRVTEISEMSQQIAAAVEQQSAVSENINQNIVSIR 488