Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  211 bits (537), Expect = 5e-59
 Identities = 133/346 (38%), Positives = 204/346 (58%), Gaps = 5/346 (1%)

Query: 93  VVFVVLL-LFAARVMLRQ-TQYLSD---VIKLMAQRNLSEPIKMDCKDEYGDVARELEKT 147
           VV V+LL + AA ++ RQ T+ L D   +++ +A  +L+    +  +DE G + + +++ 
Sbjct: 295 VVLVMLLGILAAVIITRQITRPLRDTLAIVERIASGDLTHTEAVTRRDELGVLQQGIQRM 354

Query: 148 RRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTV 207
              L++LI    D   ++ S  E ++    +T      +  E DQ+ATAM EMS+TV  V
Sbjct: 355 GTTLRELISGIRDGVTQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVHEV 414

Query: 208 AEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVV 267
           A +A+ AS    +A QQA+ G + V   I ++  L+ ++  S+ A+N +E+    I  V+
Sbjct: 415 ARNAEQASVAASDADQQARDGDKVVGEAIQQIERLAAEVVRSSDAMNVLEQDSDKIGKVM 474

Query: 268 GTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQ 327
             I++++EQTNLLALNAAIEAARAGEAGRGFAVVADEVR LAQRTQ +T EI+ +++ LQ
Sbjct: 475 DVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTEEIEGLVAALQ 534

Query: 328 SSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAE 387
           +       +M  S       VEL   AG+ L+ I   V  +  MN QIAAAA QQS+VA+
Sbjct: 535 NGTRQVSGIMLGSRTLTDSSVELTRRAGTSLESITRTVSSIQAMNQQIAAAAEQQSSVAD 594

Query: 388 EMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
           E++ ++ NVR++ E +     E   +S  +     +L   ++ FRV
Sbjct: 595 EISRSIVNVRDVSEQTAEASEETAASSVELARLGGQLQMMVSHFRV 640