Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 666 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  208 bits (529), Expect = 5e-58
 Identities = 125/354 (35%), Positives = 204/354 (57%), Gaps = 8/354 (2%)

Query: 86  WQTLLLIVVFVVLLLFAARVMLRQTQYLSDVI--------KLMAQRNLSEPIKMDCKDEY 137
           W  +L++    V+L   A + L    YL+  +        +   + +LS  I +D  DE 
Sbjct: 308 WHMMLMMSALAVVLFLVAMMGLSVMGYLNRSVVHIENQMRRAREEFDLSTRITLDSTDEL 367

Query: 138 GDVARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAM 197
           G +           + +I      S ++T   + M    ++ +    +  +E +Q+A+AM
Sbjct: 368 GSLGNAFNGMMNDFEAVIHQVKTNSLKVTDAVKRMESHSNQMRHDVAQGHSEAEQVASAM 427

Query: 198 SEMSSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVE 257
           +EMS+TV  +A +A  A+S +  A+Q+A+TG + V +T   +S L+ +I ++A A+ +++
Sbjct: 428 TEMSATVSQIASNAVEAASASGKANQEARTGNKEVGNTGKTISALASEIDAAAIAITKLD 487

Query: 258 ERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATV 317
             +  I SV+  I  I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LAQR Q++T 
Sbjct: 488 TDIQGIVSVLEVISGIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRSLAQRAQSSTT 547

Query: 318 EIQEMISQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAA 377
           +I+ M  +L+  A  AV+ M +   QA   V+ + +AG EL  IV+ V +++ MN QIAA
Sbjct: 548 DIRTMTERLKEGARVAVDAMSRGQTQAQASVQEVNHAGEELRRIVDYVSVIDSMNEQIAA 607

Query: 378 AAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAF 431
           A  +QS VAEE+N N   + E+ + +  V  EL   ++ + S  + + ++++ F
Sbjct: 608 ATHEQSAVAEEVNRNALRISEIYQNTHQVADELGRINDDLLSAVDAMGKEVSKF 661