Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  196 bits (497), Expect = 2e-54
 Identities = 117/324 (36%), Positives = 190/324 (58%), Gaps = 14/324 (4%)

Query: 117 IKLMAQRNLSEPIKMDCKDEYGDVARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSM 176
           IK +A  +LS  +    KD++  +ARE+++    + +++K   + ++ L + ++   +  
Sbjct: 165 IKRLADGDLSFRLNFFGKDDFSLIAREIDRNADNMSEMVKAIGNNARTLANASDEFNLQA 224

Query: 177 SETKDSAQEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTI 236
            +  + AQ +   +D +A AM +M++ ++ V+ +A N S  T++ +  A   +Q +   +
Sbjct: 225 KQNDELAQFQHQFLDTVAVAMDQMTAAIEEVSHNAANTSDHTKHNATAAADSKQRIAEAV 284

Query: 237 SKMSELSKDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGR 296
            ++ +L+  I +++ AV+Q+      I +VV TI  ISEQTNLLALNAAIEAARAGE GR
Sbjct: 285 RRIGQLTGQIDAASSAVDQLSGNATEIGAVVTTINGISEQTNLLALNAAIEAARAGEQGR 344

Query: 297 GFAVVADEVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVVQAADGVELITNAGS 356
           GFAVVADEVR LA RTQ ATVEIQ MI  LQS +    ++  + V QA  G   I + GS
Sbjct: 345 GFAVVADEVRTLAGRTQQATVEIQSMIEGLQSGSGQLADITHEIVEQAELGRAAIESVGS 404

Query: 357 ELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVR-------ELVEGSVTVMTE 409
           ++D + + +  + DM+ QIAA+A +QS  A ++   LN +R       E  E SV + +E
Sbjct: 405 DVDTMADSIDQVFDMSSQIAASAEEQSVSARDIASQLNEIRDQSQTIKETAERSVVLASE 464

Query: 410 LLETSEIMQSNAEELDRKITAFRV 433
           L       Q ++ ELD  ++ +R+
Sbjct: 465 L-------QQSSTELDGILSQYRL 481



 Score = 34.7 bits (78), Expect = 7e-06
 Identities = 37/212 (17%), Positives = 84/212 (39%), Gaps = 4/212 (1%)

Query: 132 DCKDEYGDVARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEID 191
           D K    +  R + +   Q+          S   T +  V+T     ++ +     N   
Sbjct: 275 DSKQRIAEAVRRIGQLTGQIDAASSAVDQLSGNATEIGAVVTTINGISEQTNLLALNAAI 334

Query: 192 QLATAMSEMSSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQ 251
           + A A  E       VA+  +  +  T+ A+ + Q+  + ++S   ++++++ +I   A+
Sbjct: 335 EAARA-GEQGRGFAVVADEVRTLAGRTQQATVEIQSMIEGLQSGSGQLADITHEIVEQAE 393

Query: 252 AVNQVEERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQR 311
                 E   ++ S V T+    +Q   ++   A  A     + R  A   +E+R+ +Q 
Sbjct: 394 LGRAAIE---SVGSDVDTMADSIDQVFDMSSQIAASAEEQSVSARDIASQLNEIRDQSQT 450

Query: 312 TQNATVEIQEMISQLQSSANSAVNLMEKSVVQ 343
            +        + S+LQ S+     ++ +  +Q
Sbjct: 451 IKETAERSVVLASELQQSSTELDGILSQYRLQ 482