Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella loihica PV-4

 Score =  204 bits (519), Expect = 7e-57
 Identities = 120/345 (34%), Positives = 196/345 (56%)

Query: 89  LLLIVVFVVLLLFAARVMLRQTQYLSDVIKLMAQRNLSEPIKMDCKDEYGDVARELEKTR 148
           L+ IVV V++ +   R +      +++ + ++A  NL+  +     DE+ +++R   +  
Sbjct: 330 LIAIVVAVLVSIAVIRPLKNSLDKVNNALNILASGNLTHKLDDSGHDEFAELSRNCNRLV 389

Query: 149 RQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSEMSSTVQTVA 208
             L+ LI+  +D S +L +  E  +   ++T    QE+ N++DQ+ATA +++SS+   V+
Sbjct: 390 DSLRTLIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVS 449

Query: 209 EHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEERVVAISSVVG 268
             A  A +    A ++AQ  +         +  L+ +++ + Q +N+V     +I S++ 
Sbjct: 450 TSADEALNQIRQADEEAQHMRAIADENKRTILALADEVAKAGQVINKVHSDSASIGSILD 509

Query: 269 TIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEIQEMISQLQS 328
            IR I+EQTNLLALNAAIEAARAGE GRGFAVVADEVR+LA RTQ++T EIQ+MI  LQ 
Sbjct: 510 VIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASRTQDSTQEIQQMIQVLQQ 569

Query: 329 SANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAAGQQSNVAEE 388
               AV++ME    QA   VE    A   L+ I N V   +D    IA AA +Q+ V+++
Sbjct: 570 GTQEAVSVMELGRQQANSCVEKTEQANVALESISNAVHYAHDSGTHIANAAQEQNLVSQQ 629

Query: 389 MNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
           ++E L ++  + E + T   +  ++S  +   AEEL   +  F+V
Sbjct: 630 VSEKLEHIAAISEETATGADQTAQSSHQVAQLAEELQASVGEFKV 674



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 26/240 (10%)

Query: 184 QEEFNEIDQLATAMSEMSSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELS 243
           QE  + I+  A+ +  M +   ++ +           ASQ   T +    +    M  L+
Sbjct: 241 QEALDNINTEASKVFTMLNGPDSILKRKGQQLDFNLQASQLLNTVESNATAVNQSMGSLN 300

Query: 244 KDISSSAQAVNQVEERVVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVAD 303
           K I S++QAV+            +  I S S +T  L L A + A     A      V  
Sbjct: 301 KAIESTSQAVS---------VKAIDEIDSASYKTLALVLIAIVVAVLVSIA------VIR 345

Query: 304 EVRNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVN 363
            ++N   +  NA          + +S N    L +    + A   EL  N    +D +  
Sbjct: 346 PLKNSLDKVNNAL--------NILASGNLTHKLDDSGHDEFA---ELSRNCNRLVDSLRT 394

Query: 364 QVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEE 423
            +Q + D + Q+AAAA + S +  +    +   +  V+   T  T+L  ++  + ++A+E
Sbjct: 395 LIQGILDRSNQLAAAAEETSAITAQTTAGIQEQKNQVDQVATATTQLSSSAMQVSTSADE 454



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 23/130 (17%), Positives = 55/130 (42%), Gaps = 9/130 (6%)

Query: 306 RNLAQRTQNATVEIQEMISQLQSSANSAVNLMEKSVVQAADGVELIT-----NAGSELDG 360
           +NLA + +   V      S+      S    + K  +   D +  I      N G ++  
Sbjct: 57  QNLALQEKQLLVAFHSKQSKELPQVRSQFTSLSKGFITELDQLNRIIQGHEDNLGGQIKS 116

Query: 361 IVNQVQLLNDMNFQIAAAAGQQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSN 420
           +    Q  ND + ++  A  Q     E + +NL ++    + + +++ +L++    ++++
Sbjct: 117 LRANYQSFNDNSLKMMQAREQSLQTQESLVDNLESLEGAADDTASLLLDLID----LETS 172

Query: 421 AEELDRKITA 430
            +  +R+I A
Sbjct: 173 QDPTEREIAA 182