Pairwise Alignments

Query, 433 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 634 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  221 bits (562), Expect = 7e-62
 Identities = 130/354 (36%), Positives = 206/354 (58%), Gaps = 9/354 (2%)

Query: 89  LLLIVVFVVLLL-------FAARVMLRQTQYLSDVIKLMAQR--NLSEPIKMDCKDEYGD 139
           L LI++ V+ LL       F A+ + R     +D +  +A+   +L+  I++  KDE   
Sbjct: 281 LKLIMIGVIALLIGTAIAWFIAKSITRPIAETTDALNDIAEGEGDLTRRIEVKSKDEMAQ 340

Query: 140 VARELEKTRRQLQDLIKLQIDASQELTSLTEVMTMSMSETKDSAQEEFNEIDQLATAMSE 199
           +A+   +   ++   +    D++  L +  E M+    ET+  A  +  E +Q+ATAM+E
Sbjct: 341 LAQAFNRFAEKIHATVAQVSDSTSLLATSAEEMSAITHETQQMANRQHLETEQVATAMNE 400

Query: 200 MSSTVQTVAEHAQNASSLTENASQQAQTGQQFVKSTISKMSELSKDISSSAQAVNQVEER 259
           M++TVQ VA +A +A+    +AS+  + G+  V+  IS +S L+ +I+ +A A+N++E  
Sbjct: 401 MAATVQEVAHNATDAADAATHASESTEQGKLLVEKVISTISLLADEIAQAANAINELERN 460

Query: 260 VVAISSVVGTIRSISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAQRTQNATVEI 319
              I SV+  IR+I++QTNLLALNAAIEAARAGE GRGFAVVADEVR LA RTQ +T EI
Sbjct: 461 TTQIDSVLVVIRNIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQASTTEI 520

Query: 320 QEMISQLQSSANSAVNLMEKSVVQAADGVELITNAGSELDGIVNQVQLLNDMNFQIAAAA 379
           Q+MI  LQ SA + V+ M  S       V L+  AGS L+ I   V  ++ MN QIA+AA
Sbjct: 521 QQMIETLQQSAKATVSSMNTSTATTQSCVSLVHEAGSALEAITQAVSTISQMNIQIASAA 580

Query: 380 GQQSNVAEEMNENLNNVRELVEGSVTVMTELLETSEIMQSNAEELDRKITAFRV 433
            +Q  V+ E+N+N+NN+ ++   +     +     + +   +  L   ++ F++
Sbjct: 581 NEQCAVSAEINKNVNNINDIATNATESAMQTARAGDELAQLSMRLTTLLSQFKI 634