Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  155 bits (393), Expect = 2e-42
 Identities = 114/426 (26%), Positives = 207/426 (48%), Gaps = 12/426 (2%)

Query: 13  LGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNI 72
           LG L+   + + L +++ +A+  DP++L   A   +      ++   LLPQ+N +   N 
Sbjct: 14  LGALADDTYID-LWQLHQEAQGADPRVLRAQALVRSGEGKERAAFGQLLPQLNASGSVNR 72

Query: 73  NRSDQAPRESDLLS-----AGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLIL 127
           +R D    + D +        +  +Q +Y    W S     + ARQ+  +   T+    +
Sbjct: 73  SRRDD---DLDRIQYNGKRMAVMLNQVIYDPQVWRSYQKYLELARQSGYESVDTRVQASI 129

Query: 128 RVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLAD 187
            +++ YF VL A+D L  VR+E  A  R L++ K  +   ++ +TD  D +A+ D + AD
Sbjct: 130 DLSERYFAVLAAEDELSLVRSELEATERNLKRVKALYARQMAMVTDTLDLEARVDALKAD 189

Query: 188 EVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAA 247
           E+ A N +  S EA+ E+ G++ S+         A     ++ +  ++ A   N +L A 
Sbjct: 190 EIEASNKVLASREAISELLGRDVSERFKRIGDNPAFILPAQAQDYWVQTALDSNPALHAR 249

Query: 248 RISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLY 307
             S   A   I+   +GHLP L L+      +   + A     +   +    ++L++PLY
Sbjct: 250 EHSVLAAEAAIAENKAGHLPRLGLNLTAQRSDIGYEGAVTPRSD---NLVASLDLQMPLY 306

Query: 308 TGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKS 367
           +GG+T +    +E    AA Q+LEA  R V+K+ R     + A +  ++A  +A+ SA+ 
Sbjct: 307 SGGSTRARVSSSESDKEAAQQELEALRRQVIKETRTAYLGMTAELSRIKATRRALESAEK 366

Query: 368 ALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVM 427
           +  ATE  F  G +  VDVLD+ +  + A ++   ++Y ++ S+L L +  G L + D+ 
Sbjct: 367 SRVATEKAFGYGVKNAVDVLDSIKDEFRARRDFYQSQYKFVTSLLVLHRWSGRLGDGDIR 426

Query: 428 DVNAGL 433
             N  L
Sbjct: 427 RANEWL 432