Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  268 bits (686), Expect = 2e-76
 Identities = 169/452 (37%), Positives = 258/452 (57%), Gaps = 23/452 (5%)

Query: 2   KKLLPLFVSAALGTLSSAVWAE-----NLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSS 56
           K  L L VS A   ++ A  A      +L  +Y +A +N+  L +  AQ  A  E V  +
Sbjct: 4   KLSLALAVSCASNGMAWAAEAPLTTRTDLVSVYQEAVDNNADLAAARAQYGAQKEVVPQA 63

Query: 57  RSALLPQINLTAGYNINRS----DQ----APRESDLLSAGINFSQELYQRSSWVSLDTAE 108
           R+ LLP  NL+AG ++N +    DQ    A R S +  A +  SQ +++   W  L  A+
Sbjct: 64  RAGLLP--NLSAGADLNNTRTELDQPAMTANRSSTVYQATL--SQPIFRADRWFQLQAAK 119

Query: 109 KKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGL 168
               QA  Q +AT+Q +IL+ A++YF VLR+QDNL   +AE+AA  RQL+Q+ +RF+VGL
Sbjct: 120 SVDEQASLQLSATEQNMILQSAESYFNVLRSQDNLASTKAEEAAFKRQLDQSNERFDVGL 179

Query: 169 SAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTE 228
           S  TDV  +QA +D   A+ +LA+  + +++EAL  +T ++Y+ L  +            
Sbjct: 180 SDKTDVLQSQASYDTARANRILAQRQVDDAFEALITLTNRQYNSLQGIVHTLPILPPAPN 239

Query: 229 SSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSN--DNAK 286
            ++A ++ A +QNL+LLA+  +   A D +    +GH P+L     Y  G+N        
Sbjct: 240 DAKAWVDTAAKQNLNLLASNYAVTAAEDTLRQRKAGHAPTLDAIAQYKKGDNDGLGFTNP 299

Query: 287 NTSGEEYN----DFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVR 342
           N +G+ Y        IG+ L +PLY+GG T+S  +++        Q  EA  R VV++ R
Sbjct: 300 NPTGQRYGGDAEQRTIGLQLSIPLYSGGLTSSQVRESYSQLTQTEQQREALRRQVVENTR 359

Query: 343 AYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSN 402
             +  +N  +  ++A  Q++IS +SA+EATE G+ VGTR IVDVLDA R+LY + +N +N
Sbjct: 360 NLHRAVNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDAQRQLYTSVRNYNN 419

Query: 403 ARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           ARYDYIL  L+L+QA GTLS  D+ D++  LK
Sbjct: 420 ARYDYILDNLRLKQAAGTLSPADLQDLSRYLK 451