Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  181 bits (460), Expect = 3e-50
 Identities = 124/420 (29%), Positives = 208/420 (49%), Gaps = 5/420 (1%)

Query: 16  LSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNI--N 73
           ++++ ++ +L ++Y +A+  DPQ+++  AQ  A  E    +  ALLPQ++ +AG N    
Sbjct: 31  VNASTFSTDLMQLYREARLEDPQIVASYAQAKAGQEHQREAMGALLPQLSFSAGSNRIHQ 90

Query: 74  RSDQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAY 133
            SD   R  D  S G+   Q LY +++W +    +  ARQ++SQ   TQ    + +A+ Y
Sbjct: 91  ESDLVQRSFDSESYGLVLRQYLYNKAAWENYQKFKSLARQSESQALETQAEASVELAQRY 150

Query: 134 FEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAEN 193
           F  L A+D LE VRAE+    R L++    +E  L+ ITD  D +A+ D + A E+ A N
Sbjct: 151 FTALAAEDELELVRAERRTTQRSLDRINALYEKQLALITDQLDLKARVDLLTAQELDARN 210

Query: 194 SLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDV 253
            ++ S EAL EI G+   +      +      +  S E  +      N +L A     + 
Sbjct: 211 QVSLSREALAEIVGRPVKERLNRIREDLQLQVSANSLETWVRDGMALNPALKANESGVEA 270

Query: 254 ARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTT 313
           A   +     GH P+L+L+        +N+   N+     + +  G+ L+VPLY+GG+T+
Sbjct: 271 AGAALRSGKGGHYPTLSLNLS---AQQTNEGYNNSLAPRTDSYVAGIGLQVPLYSGGSTS 327

Query: 314 SLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATE 373
           +  +      V A Q LEA  R VVK++       N++   + A   A+ SA+ +  A E
Sbjct: 328 ARVRGLYEDQVVAEQQLEATRRRVVKEITNAYLTANSNGEKIGANRLALESAQLSRVAAE 387

Query: 374 AGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMDVNAGL 433
                G    VDVL + R  + A ++L   +YD++ +VL L +  G    + + +VN  L
Sbjct: 388 KALSYGMVNSVDVLASVRNEFRARRDLLKTQYDFLSNVLILNRWAGKPPAEGIENVNGWL 447