Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Type I secretion outer membrane protein, TolC precursor from Pseudomonas fluorescens FW300-N2E2

 Score =  150 bits (380), Expect = 6e-41
 Identities = 117/433 (27%), Positives = 199/433 (45%), Gaps = 20/433 (4%)

Query: 4   LLPLFVSAAL-GTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLP 62
           LL L+   AL   L +A    +L   Y+ ++ NDP + S A   +A+       R  L P
Sbjct: 12  LLGLYTGWALIDPLWAAEGGLSLTAAYDASRLNDPTVQSAAHAFEASRHEEDIGRGGLYP 71

Query: 63  QINLTAGYNINRSDQAPRESDLLSAG--------INFSQELYQRSSWVSLDTAEKKARQA 114
           Q++LT+ Y          +S  +++         +   Q LY ++ W +    + + +  
Sbjct: 72  QVSLTSRYGYGGRTDGGDDSTYVNSNDYQANNVTLAAQQPLYDKARWAAYQEGKARGQLG 131

Query: 115 DSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDV 174
              +    Q L  RVAK YF+V RA++ ++ ++ +KAA+   + Q+K+ +E G  AITD+
Sbjct: 132 TQVFDVAGQTLYDRVAKGYFDVARAENEIKLIQQQKAAIQGLVVQSKKLYEGGQGAITDI 191

Query: 175 HDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKR--FAASRTTESSEA 232
            +AQA+ D V A E  A+        ALR ++G+    +  +   R   AA       + 
Sbjct: 192 DEAQARLDLVQAQEAEAQ---ARRVAALRALSGRASVPIDDILPMREELAAGSPIPPEQD 248

Query: 233 L---IEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTS 289
           L      A++ +  L A   +  VA        +GH P+L+L               +  
Sbjct: 249 LPYWTAIAREASPELAARLAAVKVAEAQADSQRAGHYPTLSLTTQLTRRETRQYQELDPR 308

Query: 290 GEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNIN 349
            + Y    +GV L +PLY GG   +   +AE     A  D +   + + +D+ A    + 
Sbjct: 309 QDTYY---VGVQLDIPLYRGGAVRASVAKAEAQLAGAQSDYDVQRQQLAEDIEADYLGVV 365

Query: 350 ASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYIL 409
           A     +A ++AV S + AL +TE GF  G R+ VD+LDA +RL+ A ++L N + D + 
Sbjct: 366 AGFAKSKAMQRAVESNQRALTSTEKGFQGGVRSTVDILDAQQRLFQARRDLLNTKLDMLQ 425

Query: 410 SVLQLRQAIGTLS 422
           S + L    G ++
Sbjct: 426 SYVSLHTHTGQMN 438