Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 484 a.a., type I secretion outer membrane protein, TolC family from Pseudomonas stutzeri RCH2

 Score =  270 bits (690), Expect = 7e-77
 Identities = 173/461 (37%), Positives = 258/461 (55%), Gaps = 30/461 (6%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAE---------NLAEIYNQAKENDPQLLSVAAQRDAAFE 51
           M + LPL ++ A  T + A WA+         +L  +Y QA  N+  L +  AQ  A  E
Sbjct: 1   MLRRLPLALAVASLT-AGAAWAQETVPLASKTDLVSVYQQAVNNNADLAAARAQFRARQE 59

Query: 52  AVTSSRSALLPQINLTAGYNINRSD---QAPRESDLLSAG-----INFSQELYQRSSWVS 103
            V  +R+ LLP  NL+AG  ++ ++      R S  LS          SQ +++   W  
Sbjct: 60  IVPQARAGLLP--NLSAGAELSDTETDVDTSRGSTSLSRSGTAYQATLSQPIFRADRWFQ 117

Query: 104 LDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQR 163
           L  A+  + QA  +Y+  +Q LIL+ A++YF VLRAQDNL  V+AE+AA  RQL+Q  +R
Sbjct: 118 LKAAQAVSEQAAIEYSIAEQDLILQSAQSYFAVLRAQDNLAAVKAEEAAFKRQLDQANER 177

Query: 164 FEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAA 223
           FEVGLS  TDV +AQA FD   A+  +A+  + ++++AL  +T +EY  L  +       
Sbjct: 178 FEVGLSDKTDVLEAQAGFDTARANRSIAQRQVDDAFQALFTLTNREYIALEGIRHTLPVL 237

Query: 224 SRTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSN- 282
           +     ++A ++ A +QNL+LLA   +   A + +    SGH P+L     Y  G+N + 
Sbjct: 238 APAPNEAKAWVDTATRQNLNLLAVNYAVTAAEETLRQRRSGHAPTLDAVASYRKGDNDSL 297

Query: 283 --DNAKNTSGEEYNDF-------KIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAA 333
              N++N  G +   +        IG+ L +PLY+GG TTS +++A +    + Q  E+ 
Sbjct: 298 GFSNSQNIPGFDMPRYTGDVEQRSIGLQLNIPLYSGGLTTSQSREAYYQLSQSEQQRESL 357

Query: 334 YRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRL 393
            R VV+  R  +  +N  I  + A  Q++IS +SALEATE G+ VGTR IVDVLD  RRL
Sbjct: 358 RRQVVESTRNLHRAVNTDIEQVEARRQSIISNQSALEATEIGYQVGTRNIVDVLDTQRRL 417

Query: 394 YDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           Y A ++ +NARYDYIL  L+L+QA GTL+  D+  + A LK
Sbjct: 418 YGAVRDYNNARYDYILDNLRLKQAAGTLNPDDLQQLAAYLK 458