Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  223 bits (568), Expect = 1e-62
 Identities = 138/422 (32%), Positives = 220/422 (52%), Gaps = 11/422 (2%)

Query: 24  NLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQ----AP 79
           +L ++Y  A  ND +L +      A  E V  +R+ LLP +   A   + R ++      
Sbjct: 56  DLLDVYKAAFFNDARLSAARHAYRAQREGVPQARAGLLPNLTAGATSEVTRLERDEPSLS 115

Query: 80  RESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRA 139
           RE    +   N SQ L++   W  L  A+    QA  + +A +Q L+L  A+AYFE LR 
Sbjct: 116 RERSGTTFRANLSQPLFRIDRWFQLKAAQSSLDQAGLELSAKEQNLLLTAAQAYFETLRQ 175

Query: 140 QDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSY 199
            D     +AE+AA+ RQ +Q + R E G S+ITDV+DAQA +D   A+  L +  + ++Y
Sbjct: 176 LDAFAAAQAEEAALLRQRDQAQGRLEDGASSITDVYDAQAAYDNARANRQLVQRKVDDAY 235

Query: 200 EALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNIS 259
           EAL  +T   Y+ +A +  +    +     + A ++ A +QNL L A+  +   A   ++
Sbjct: 236 EALERLTKHSYTSIAGIRHQMPVEAPIPNDARAWVDIALRQNLELQASERAVSAAEQTLN 295

Query: 260 LASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFK-------IGVNLKVPLYTGGNT 312
              +GH P++     Y  G+N +    N +    N ++       IG+ L +PLY+GG T
Sbjct: 296 QRKAGHAPTVDAVASYRKGDNDSFGYSNPTDFGSNGYRDQVAQSSIGIELNIPLYSGGMT 355

Query: 313 TSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEAT 372
            S  K++      +  + E   R VV + R     IN  I  + A  Q++IS + ++EA 
Sbjct: 356 NSQIKESTERLYQSQDEQEDRRRDVVLNTRNAFRGINTGIEQIAARRQSIISGQKSVEAN 415

Query: 373 EAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMDVNAG 432
           + G DVG+R I DVL+A R+LY A ++ ++ARYDYIL  L+L+Q+ G LS  D+  +   
Sbjct: 416 QVGVDVGSRNIADVLNAQRQLYAAVRDYNDARYDYILDNLKLKQSAGILSPDDLKALALY 475

Query: 433 LK 434
           LK
Sbjct: 476 LK 477