Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  180 bits (457), Expect = 7e-50
 Identities = 119/425 (28%), Positives = 207/425 (48%), Gaps = 5/425 (1%)

Query: 11  AALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGY 70
           AA    S++ ++ +L ++Y +A+  DP++LS   +  +A ++   +   LLPQ+     Y
Sbjct: 28  AAPQVTSASAYSVDLMKLYREARLEDPRMLSAYLRAQSAVDSERDAFGGLLPQVTANGSY 87

Query: 71  N-INRSDQAPRES-DLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILR 128
           N I R D   RE  +  S  +N +Q LY + +W +   A+    Q   Q    Q    + 
Sbjct: 88  NRILRKDDTQREIYNNSSYSLNLTQYLYNKQAWEAYQKAKSTTEQKGHQAEDAQAEATVD 147

Query: 129 VAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADE 188
           +AK YF+ L A D LE + AE+ A  + L++    ++  ++ +TD+ D +A+ D + A E
Sbjct: 148 LAKRYFQALSADDELELIMAERRATQKSLDRVSAMYDKKMAVVTDLLDLKARVDLLAAQE 207

Query: 189 VLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAAR 248
           V A N +  S  AL EI G+  ++         A    ++S +  + +A   N  L A  
Sbjct: 208 VDARNQIRLSRAALSEIVGRPITEPLSRIRNDIALQAPSKSMDTWVAQAIDSNPLLKARE 267

Query: 249 ISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYT 308
            S DVA   +     GH P+LT   G    +   DN  +   + Y      + ++VP+Y+
Sbjct: 268 SSLDVANAAVREGKGGHYPTLTFTLGAQQSDVGYDNTLSPRSDSY---VATIGVRVPIYS 324

Query: 309 GGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSA 368
           GG+T++  +      +A  QD+E+  R VVK+         +S+  +RA + A+ SA+ +
Sbjct: 325 GGSTSARVRGLYNEQLATEQDVESVRRQVVKETTNAYLTAFSSVEKIRANKNALASAEQS 384

Query: 369 LEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQDVMD 428
             A +  F  G    VDVL + +  + A ++L  A+YD+I ++  L +  G   ++ V  
Sbjct: 385 SIAAQKAFSYGVVNAVDVLTSVQNEFKARRDLLRAQYDFITNLFILNRWAGRPPQESVDS 444

Query: 429 VNAGL 433
           VN  L
Sbjct: 445 VNVWL 449