Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 479 a.a., Type I secretion outer membrane protein, TolC from Pseudomonas syringae pv. syringae B728a

 Score =  268 bits (685), Expect = 3e-76
 Identities = 169/454 (37%), Positives = 260/454 (57%), Gaps = 23/454 (5%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLA--------EIYNQAKENDPQLLSVAAQRDAAFEA 52
           M + L L V+ +  + S   WA  L          +Y QA +N+  L +  A  DA  EA
Sbjct: 1   MLRKLSLVVAVSFAS-SGLTWAAELPMPTQTGLLSVYQQAVDNNADLAASRADYDARKEA 59

Query: 53  VTSSRSALLPQINLTAGYNINRS--DQ----APRESDLLSAGINFSQELYQRSSWVSLDT 106
           V  +R+ LLP I+ +A  +  R+  DQ    A R  +L  A +  SQ +++   W  L  
Sbjct: 60  VPQARAGLLPNISGSAQNSSTRTSIDQPRAVASRSGNLYQATL--SQPIFRADRWFQLQA 117

Query: 107 AEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEV 166
           AE    QA  + +AT+Q LIL+ A++YF VLRAQDNL   +AE+AA  RQL+Q  +RF+V
Sbjct: 118 AEASNEQAALELSATEQNLILQSAQSYFSVLRAQDNLASTKAEEAAFKRQLDQANERFDV 177

Query: 167 GLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRT 226
           GLS  TDV  AQA +D   A  ++A+  + ++++AL  +T +EY+ +  +       + T
Sbjct: 178 GLSDKTDVLQAQASYDTSRASRLIAQRQVEDAFQALVTLTNREYNSIEGIVHTLPVLAPT 237

Query: 227 TESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNN-----S 281
              ++A ++ A QQNL+LLA+  + + A + +    +GH P+L     Y  G+N     S
Sbjct: 238 PNDAKAWVDTAAQQNLNLLASNYAVNAAEETLRQRKAGHAPTLDAVATYQRGDNDALGFS 297

Query: 282 NDNAKNTS-GEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKD 340
           N N    + G +     IGV L +P+Y+GG T+S  ++A      + Q  E+  R VV++
Sbjct: 298 NPNYTGRNYGGDVEQRSIGVQLNIPIYSGGLTSSQVREAYARLSQSEQRRESLRRQVVEN 357

Query: 341 VRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNL 400
            R  +  +N  +  ++A +Q++IS +SALEATE G+ VGTR IVDVLDA R+LY + ++ 
Sbjct: 358 TRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYASVRDY 417

Query: 401 SNARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434
           +N RYDYIL  L+L+QA GTL+  D+ D++  LK
Sbjct: 418 NNTRYDYILDNLRLKQAAGTLNPGDLQDLSRYLK 451