Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 576 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 96/432 (22%), Positives = 171/432 (39%), Gaps = 39/432 (9%)

Query: 25  LAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINL--TAGYN-----INRSDQ 77
           L +  N A+ N+PQ+     Q      A+  + +AL P + L  TAGY      +N ++ 
Sbjct: 143 LEQALNLARLNNPQIQVRQLQVQQRQAALRGTEAALYPTLGLQGTAGYQQNGTRLNVTEG 202

Query: 78  APRE-----------SDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLI 126
            P +              + A +N +  ++       L  +  +  QA+    A  + L 
Sbjct: 203 TPTQPTGSSLFTTLGESSIGATLNLNYTIFDFVRGAQLAASRDQVTQAELDLEAALEDLQ 262

Query: 127 LRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLA 186
           L V++AY+ +  A   +   R    A  R L+  +  F  G+    DV   Q Q   +  
Sbjct: 263 LTVSEAYYRLQNADQLVRIARESVVASERSLKDAEALFRAGVGTQFDVLRQQVQ---LAQ 319

Query: 187 DEVLAENSLTNSYEALREITGQ----EYSKLAVLDTKRFAASRTTESSEALIEKAQQQNL 242
           D+    +S+ N  +A R +       +   +   D    AA       E+++  A Q   
Sbjct: 320 DQQNLVDSIGNQDKARRALVQALNLPQNVNVLTADPVELAAPWNLSLDESIV-LAFQNRP 378

Query: 243 SLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKN------------TSG 290
            L    + ++++ +    A    LP L L   Y      N N ++            T+ 
Sbjct: 379 ELEREVLQRNISYNQAQAARGQVLPQLGLQASYGVNGAINSNLRSGSQALTFPSPTLTNT 438

Query: 291 EEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINA 350
             YN + IG+ L VPL+ GG   +  +Q E     A Q+       +  DV     ++  
Sbjct: 439 SSYN-YSIGLVLNVPLFDGGLANANAQQQELNGQIAEQNFVLTRNQIRTDVETAFYDLQT 497

Query: 351 SIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILS 410
           ++  +    +AV  A+ AL      F  G  T  +V+D+ R L  A  N  NA   Y L+
Sbjct: 498 NLANIGTTRKAVEQAREALRLARLRFQAGVGTQTEVIDSQRDLTRAEANALNAITAYNLA 557

Query: 411 VLQLRQAIGTLS 422
           + ++++A+  ++
Sbjct: 558 LARIKRAVSNVN 569



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 21/206 (10%)

Query: 18  SAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQ 77
           +A W  +L E    A +N P+L     QR+ ++    ++R  +LPQ+ L A Y +N +  
Sbjct: 359 AAPWNLSLDESIVLAFQNRPELEREVLQRNISYNQAQAARGQVLPQLGLQASYGVNGAIN 418

Query: 78  A-----------PRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQ-------ADSQYA 119
           +           P  +   ++  N+S  L           A   A+Q       A+  + 
Sbjct: 419 SNLRSGSQALTFPSPTLTNTSSYNYSIGLVLNVPLFDGGLANANAQQQELNGQIAEQNFV 478

Query: 120 ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQA 179
            T+  +   V  A++++     N+   R         L   + RF+ G+   T+V D+Q 
Sbjct: 479 LTRNQIRTDVETAFYDLQTNLANIGTTRKAVEQAREALRLARLRFQAGVGTQTEVIDSQR 538

Query: 180 QFDGVLADEVLAENSLTNSYEALREI 205
               +   E  A N++T    AL  I
Sbjct: 539 D---LTRAEANALNAITAYNLALARI 561