Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 432 a.a., outer membrane channel protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  407 bits (1045), Expect = e-118
 Identities = 220/436 (50%), Positives = 297/436 (68%), Gaps = 8/436 (1%)

Query: 3   KLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLP 62
           K   L  + AL   +S+V A++L +IY QA  NDP +L   AQR+A +  +  +R+ LLP
Sbjct: 4   KFSSLCAAIALAASASSVQADDLLQIYQQALTNDPLVLQAQAQRNALYAQIEENRAPLLP 63

Query: 63  QINLTAGYNINRSDQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQ 122
            I+   GY+    D +  +SD  + G+  +Q +Y  S+WV L  AEK A QAD+ YA+  
Sbjct: 64  TISANVGYDKAWKDPS-EDSDGFTGGVKLTQVIYDHSAWVGLSLAEKAAAQADAAYASAL 122

Query: 123 QGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFD 182
           Q LI RV KAYF+VL+A+DN EF  AEK A+ RQLEQTKQRF VGL+A+TDVH+AQAQ+D
Sbjct: 123 QNLITRVTKAYFDVLKAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAMTDVHEAQAQYD 182

Query: 183 GVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRF-AASRTTESSEALIEKAQQQN 241
              A E+LAEN+L+NSYEALREITG ++  + VLDT RF AA+    +    I+ A+  +
Sbjct: 183 LASATEILAENTLSNSYEALREITGIDHKSINVLDTNRFSAAAPAPAAPNEWIKMAENNS 242

Query: 242 LSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVN 301
             LL  RI +D+A + ISL  +GH PSL+L  GY  G       + T G +Y++  IGV 
Sbjct: 243 TDLLTQRIGKDIAEETISLYKAGHYPSLSLSAGYTKG------FEQTPGPDYDNSSIGVT 296

Query: 302 LKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQA 361
           L +P++ G   TS  +QA++ YV AS+ LE  YR VVKDVR   NN+ ASI ++RAYEQ+
Sbjct: 297 LSIPIFEGFKVTSKVEQAQYKYVEASEKLEQTYRRVVKDVRNNFNNVGASISSIRAYEQS 356

Query: 362 VISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTL 421
           V+S++SAL AT++GF+VGTRTIVDVL+ TR LYD+ + LS+ARY YI SVL L+QA GTL
Sbjct: 357 VLSSESALGATQSGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYISSVLALKQAAGTL 416

Query: 422 SEQDVMDVNAGLKVAK 437
           +E DV+ +N GLK A+
Sbjct: 417 NEDDVIAINNGLKAAE 432