Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 499 a.a., RND efflux system, outer membrane lipoprotein, NodT (NCBI) from Rhodospirillum rubrum S1H

 Score = 78.6 bits (192), Expect = 4e-19
 Identities = 95/438 (21%), Positives = 173/438 (39%), Gaps = 35/438 (7%)

Query: 6   PLFVSAALG--TLSSAVWAE-----NLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRS 58
           P +  A  G  T+++  W E      L  +  QA E++  L S A   ++A       R+
Sbjct: 51  PAYDQAQAGGETIATLGWREFFRDPALQRLIAQALEHNRDLRSAALTVESARATYRIERA 110

Query: 59  ALLPQINLTAGYNINRSDQAPRESDLLSAGINFSQEL----YQRSSWVSLDTAEKKARQA 114
            LLP +N        R+ +   ++       N+S  +    Y+   +  + + E++A + 
Sbjct: 111 DLLPTVNGGTDLTHQRTPRTATQTGKAQTTTNYSANIGTTSYEIDFFGRIRSLEEEALE- 169

Query: 115 DSQYAATQQG-------LILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVG 167
             QY AT++        LI  VA AY  +L  +  L+               T+Q F+ G
Sbjct: 170 --QYFATEEARRSVQIALIAEVANAYITLLADRTLLQLTEETLNTRIESFNLTQQSFDRG 227

Query: 168 LSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTT 227
           +    DV  AQ   +   A+  +    +     ALR + G +     +  T      R  
Sbjct: 228 VGTRLDVTQAQTTVETARANRAIYTRYVAQDINALRLLVGDQLDANLLAGTPPLDLGRFF 287

Query: 228 ESSEA-LIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAK 286
            +  A L      +   +L A      A  NI  A +   P ++L G     + S  +  
Sbjct: 288 PNVPAGLPSDLLLRRPDILEAEHKLVAANANIGAARAAFWPKISLTGNLGTASASLGDLF 347

Query: 287 NTSGEEYNDFKIGVNLKVPLY----TGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVR 342
           ++    ++   +G +L VPL+          S   Q E A  A  + ++ A+R V   + 
Sbjct: 348 SSGSLAWS---VGPSLSVPLFDFWRNEATLESAKVQREIAVAAYEKSIQTAFREVADALA 404

Query: 343 AYNNNINASIG-ALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLS 401
           A       ++G  LRA +  V + + +   +   +D G    +  LD+ R LY A ++L 
Sbjct: 405 A-----KGTLGDQLRAQQDLVAATQESYALSRNRYDQGIDNYLSTLDSQRSLYAAQQDLI 459

Query: 402 NARYDYILSVLQLRQAIG 419
           + R + + + + L + +G
Sbjct: 460 SVRANQLTNYITLYKVLG 477