Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

 Score =  130 bits (327), Expect = 1e-34
 Identities = 107/421 (25%), Positives = 193/421 (45%), Gaps = 14/421 (3%)

Query: 11  AALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGY 70
           A LG LSS V AE   E    A + +P L +  A   A  E V  + S   PQ+++    
Sbjct: 67  AGLG-LSSPVMAETFDEALVSAYQANPTLQARRALLRAVDEQVPQALSDWRPQVSVQGST 125

Query: 71  NINRSDQAPRESDL----LSAGINFSQELYQRSSWVS-LDTAEKKARQADSQYAATQQGL 125
              + D  P   +L     + G+   Q +++    V+  D A+ + +   +   + +Q +
Sbjct: 126 FYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRTVAQTDQAKAQVQSERALLRSVEQTV 185

Query: 126 ILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVL 185
           +L  A+AYF V+R Q  LE     +  + RQL+    RF VG    TDV  A ++  G +
Sbjct: 186 LLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVGEITRTDVAQADSRLAGAI 245

Query: 186 ADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLL 245
           AD + AE +L +S     ++ G     +          +R  ++ E  +  A   N  ++
Sbjct: 246 ADRIQAEGTLESSRANYTQVVGHPPENIQPPPPY----ARLPQTLEDGLNTALSANPDVI 301

Query: 246 AARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVP 305
           AA      A+  I       LP+L  +  Y++ +N +     T+  +   F+ G+NL VP
Sbjct: 302 AALYVWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPSA----TTEYDTKTFQAGLNLTVP 357

Query: 306 LYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISA 365
           LY GG   S  + A+         ++    +V++ + +    + ++   + +Y+  + +A
Sbjct: 358 LYQGGAVYSQIRDAKHRAGQRRLQVDEQREAVIESLTSAWETLTSARARVSSYKSQIEAA 417

Query: 366 KSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTLSEQD 425
             AL+  +    VG+RT++DVLDA + L  +  NL  A  D  +S  ++  A+G ++ +D
Sbjct: 418 GIALDGVQREAQVGSRTVLDVLDAEQELLTSRVNLVRAERDSAISTYEVLAALGAMTAED 477

Query: 426 V 426
           +
Sbjct: 478 L 478