Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 460 a.a., TolC family protein from Parabacteroides merdae CL09T00C40

 Score = 89.4 bits (220), Expect = 2e-22
 Identities = 85/403 (21%), Positives = 165/403 (40%), Gaps = 44/403 (10%)

Query: 52  AVTSSRSALLPQINLTAGYNINRSDQA-------------PRESDL-------------- 84
           A   S +AL PQ++  A YN     Q              P   D+              
Sbjct: 63  AQKGSYAALFPQVSFAADYNRTLKKQVMYMDGFDMGSTEIPGMEDMPNMDEGIEVGRDNN 122

Query: 85  LSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLE 144
            + G N S  +   + W SL  +      A  Q  +++  ++ +V K Y+ VL A D+  
Sbjct: 123 WNLGFNASMPIVNAALWKSLSISAVDVELAIEQARSSKIAMVNQVKKGYYGVLLANDSYR 182

Query: 145 FVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALRE 204
             +             K +FE G  A  D+  A         + + AEN+L  +   L+ 
Sbjct: 183 VFKESYDNAMENYLDIKHKFEQGTVAEYDLIRANVTVKNSEPNMLQAENALVLAKWQLKA 242

Query: 205 ITGQEYS-------KLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDN 257
           + G +         +L   +   F    +T+++  L      + + L A ++ +      
Sbjct: 243 LLGMDLDINIECEGQLTDFEKDLFGDFLSTDTT--LANNTDLKQMDLQAKQLEK-----T 295

Query: 258 ISLASSGHLPSLTLDGGYNYGNNSND-NAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLT 316
           +++    +LP+L+L G Y +   +ND   K+     Y+   +G++L +P+++GG+     
Sbjct: 296 LTMQKFDYLPTLSLTGLYQWTAMNNDFKFKDYMWNPYS--MVGLSLSIPIFSGGSKFYKI 353

Query: 317 KQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGF 376
           KQ   +    S   E   R++   ++ Y +N+N  +    A ++ V  A+     ++  +
Sbjct: 354 KQTRNSIEQLSLQREDTQRNLQLAIKQYIDNMNTCVKRFDASQKGVEQAERGYMISQKRY 413

Query: 377 DVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIG 419
           D G  T++++ D+   L  A  N + A YDY+++   L + +G
Sbjct: 414 DTGAGTLLEMNDSELALTQAKLNFNQAIYDYMVAKADLEKVLG 456