Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., outer membrane channel protein (RefSeq) from Shewanella loihica PV-4

 Score =  405 bits (1041), Expect = e-117
 Identities = 220/436 (50%), Positives = 299/436 (68%), Gaps = 8/436 (1%)

Query: 3   KLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLP 62
           K+  L  +  L   +SAV A++L +IY QA  NDP  L   AQRD  +E +  +R+ LLP
Sbjct: 11  KIRTLCAALTLAATTSAVHADDLLQIYQQALTNDPIALQAQAQRDRLYEQIEENRAPLLP 70

Query: 63  QINLTAGYNINRSD-QAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAAT 121
            I+ + GY  + ++    + +  L AG++  Q +Y  S+WV LD AE  A QAD+ YA+T
Sbjct: 71  TISASVGYGKSWTNVDDDKYNSGLDAGVSLKQVIYDHSAWVGLDLAELAASQADAAYAST 130

Query: 122 QQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQF 181
            Q LI+RV  AYF+VL A+DN EF  AEK A+ RQLEQTKQRF VGL+AITDVH+AQAQ+
Sbjct: 131 LQSLIIRVTGAYFDVLAAKDNYEFKGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQY 190

Query: 182 DGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTES-SEALIEKAQQQ 240
           D   A E+LAEN L NSYEALREITG ++  + +LDT RF A   T +     ++ A+  
Sbjct: 191 DLARASEILAENQLINSYEALREITGIDHKSIDILDTTRFTAVPPTPAMPNDWLKMAETS 250

Query: 241 NLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGE--EYNDFKI 298
           ++ LL  RI +D+A+  ISL  +GH+PSL+L+ GY     +N N KN +G+  +Y++  +
Sbjct: 251 SVDLLTTRIGKDIAQQTISLYKAGHMPSLSLNAGY----TTNLNQKNQAGDLSDYDNANV 306

Query: 299 GVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAY 358
           G+ L VP++ G   +S   QA++ YV AS+ +E  YR VVKDVR   NN+ ASI ++RAY
Sbjct: 307 GLTLSVPIFEGFKVSSKVNQAQYQYVEASEKMEQTYRKVVKDVRNNFNNVGASISSIRAY 366

Query: 359 EQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAI 418
           EQ+VIS++SAL+AT+AGF+VGTRTIVDVL+ TR LYD+ + LSNARY YI S+L L+QA 
Sbjct: 367 EQSVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRQLSNARYGYINSILALKQAT 426

Query: 419 GTLSEQDVMDVNAGLK 434
           GTLSE DV+ +N GLK
Sbjct: 427 GTLSEDDVIAINNGLK 442