Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 470 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella loihica PV-4

 Score =  102 bits (255), Expect = 2e-26
 Identities = 102/445 (22%), Positives = 188/445 (42%), Gaps = 29/445 (6%)

Query: 2   KKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALL 61
           +  + L +SA L  +  A  ++ L +      + +P +     +  A  E V  + +  +
Sbjct: 11  RSAMALAISAML--IPGAASSQTLEQAVAHTLDTNPDIRIAFNRFKAREEQVNQAIAGYM 68

Query: 62  PQINLTAGYNIN---------RSDQAPRESD----LLSAGINFSQELYQRSSWVSLDTAE 108
           P ++++ GY            R+ Q   + D    L+   + FS +      + +    +
Sbjct: 69  PTVDISGGYGWEQTNSPSTRRRAGQGDVDKDGVIELMRGEVGFSIKQMLFDGFYTSSEVD 128

Query: 109 KKARQADS-QYA--ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFE 165
           + + +A + Q+A  A  + + L VAK Y   +R++  L        +     +Q KQR +
Sbjct: 129 RFSFEASADQWALFAAAEDIALDVAKVYVNYIRSEQVLTLAEKNLQSHKDIYDQIKQRTD 188

Query: 166 VGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAV-LDTKRFAAS 224
            GL ++ D+     +     A+ + A+N+  ++      I  +E   L V +       +
Sbjct: 189 SGLGSVADLSQITGRLARANANVIAAKNNFFDAKAQFIRIVEKEPENLIVPVPDDDMLPT 248

Query: 225 RTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDN 284
             T+     ++ AQ+ +  L +A      A +  S A S + P L+L+ G N+ +N +  
Sbjct: 249 NLTDG----LKVAQENHPILKSAASDISAAENERSSAQSNYYPKLSLELGGNWNDNLDGE 304

Query: 285 ------AKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVV 338
                 A    G   ND    V +K  L+ GG   +  K+A +    A +  + AYR VV
Sbjct: 305 DGYSAFASQNVGGHNNDLIAMVRVKYNLFAGGKDLAREKEAAYKIGEAKEIRQRAYRQVV 364

Query: 339 KDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANK 398
           + V    N               VI+AK    A    F++G RT++D+LD    L++A K
Sbjct: 365 EGVNLAWNAYEMLEPQKLYIRDHVIAAKDTQVAYSQQFNLGQRTLLDLLDTENELFEARK 424

Query: 399 NLSNARYDYILSVLQLRQAIGTLSE 423
           +  +A YD I+S  ++  A G L E
Sbjct: 425 DYLDAEYDEIISEYRILNATGRLLE 449