Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., outer membrane efflux protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 75.5 bits (184), Expect = 3e-18
 Identities = 86/401 (21%), Positives = 171/401 (42%), Gaps = 17/401 (4%)

Query: 32  AKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQAPR------ESDLL 85
           A  ++  ++S  A RDAA E   S+R A  P ++ + GYN  R ++ PR      + D  
Sbjct: 81  ALRDNQGVVSARAGRDAAEEGRKSARGAFGPAVSTSYGYN--RLNEKPRSMSRELDDDTY 138

Query: 86  SAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQG---LILRVAKAYFEVLRAQDN 142
           +  +  SQ L+  +    L T +K A + + +     +    L ++V +A+   L++ +N
Sbjct: 139 TWTVGVSQPLF--TGLRLLSTYQKAALETERKSLTLDKSRLDLAVQVQEAFLAHLKSGEN 196

Query: 143 LEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEAL 202
           +   R   + +  Q + T+  ++VGL    DV  A+       +  + AEN+       L
Sbjct: 197 VRSARDALSRLREQAKVTRAFYDVGLRPRLDVLQAEVDVTNAESLLITAENNHATQRARL 256

Query: 203 REI-TGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNISLA 261
             + T    S  A + T        T   E  +E+A +    +  A  + ++A  ++ +A
Sbjct: 257 NTLLTLPVDSDTAYVGTLVPVGFDMT--LEQCLERAYRNRPDVRIAGKAVEIAGKDVRIA 314

Query: 262 SSGHLPSLTLDGGY-NYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAE 320
            SG  P ++ +  +   G++   +    S   ++ +  G+  +  ++  G T    +QA 
Sbjct: 315 DSGLYPQVSANFNWATEGDHPEASGSTLSPNGFSQWSTGLKAEWSVFEWGKTWYSGQQAR 374

Query: 321 FAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGT 380
                   +       V  +V++    +  S   +    + ++ A+ A     A +    
Sbjct: 375 QVETQVRAEEANLRHEVAYEVQSRLLTLTDSSKRIAVATKGLVQAEEAYRVAVARYQAQV 434

Query: 381 RTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTL 421
            T  DVLDA  +L  A   L+ A+ +Y+ ++ +L  A+G L
Sbjct: 435 GTNTDVLDAQAKLTAAEAALTGAKAEYLDALSKLWAAMGEL 475



 Score = 32.0 bits (71), Expect = 4e-05
 Identities = 44/184 (23%), Positives = 74/184 (40%), Gaps = 18/184 (9%)

Query: 10  SAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAG 69
           +A +GTL    +   L +   +A  N P +       + A + V  + S L PQ+  +A 
Sbjct: 268 TAYVGTLVPVGFDMTLEQCLERAYRNRPDVRIAGKAVEIAGKDVRIADSGLYPQV--SAN 325

Query: 70  YNINRSDQAPRESDLLSAGINFSQ-ELYQRSSWVSLDTAE-----KKARQADSQYAATQQ 123
           +N       P  S    +   FSQ     ++ W   +  +     ++ARQ ++Q  A + 
Sbjct: 326 FNWATEGDHPEASGSTLSPNGFSQWSTGLKAEWSVFEWGKTWYSGQQARQVETQVRAEEA 385

Query: 124 GLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQ-------RFEVGLSAITDVHD 176
            L   VA   +EV      L       A   + L Q ++       R++  +   TDV D
Sbjct: 386 NLRHEVA---YEVQSRLLTLTDSSKRIAVATKGLVQAEEAYRVAVARYQAQVGTNTDVLD 442

Query: 177 AQAQ 180
           AQA+
Sbjct: 443 AQAK 446