Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., RND efflux system, outer membrane lipoprotein, NodT family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 82.4 bits (202), Expect = 3e-20
 Identities = 100/435 (22%), Positives = 188/435 (43%), Gaps = 36/435 (8%)

Query: 10  SAALGTLSSAVWA----ENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQIN 65
           +A  GT+    W       L  +   A +++  L    A  D A   +  +R+  +P+++
Sbjct: 35  TADTGTVQDGWWKGFGDPALDALVASALDHNRDLAKAIANVDEARAQLGLARANQMPRVD 94

Query: 66  LTAG-----YNI---NRSDQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQAD-- 115
                    Y++   N  D++ R  DL +AG   S   Y+   W     A + AR AD  
Sbjct: 95  AQGASQRQRYSLEGFNSFDESTRVQDLHNAGGVLS---YEMDLWGRYRRASEAAR-ADLL 150

Query: 116 SQYAA---TQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAIT 172
           S  AA    +  L  +VA+ YF++      L+  R   A+     E  K RFE+GL++  
Sbjct: 151 STMAARDTVRLALTAQVARTYFDLRAYDQQLQVARDTLASRESTQELRKVRFELGLTSEL 210

Query: 173 DVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAA--------S 224
           D   A A+     +     + +++ S  AL  +TG+    +     +R  A        S
Sbjct: 211 DYRQAIAEAAAARSTVHTLQYNVSASEAALGVLTGKSPRDIVTGTVERGLAVDAVPVPPS 270

Query: 225 RTTESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDN 284
                  AL+E+       ++ A      A  NI +A + + PS++L G   Y   S+D 
Sbjct: 271 VPAGLPSALLERRPD----IVQAEQQLAAASANIGVAKAAYFPSISLTGLLGY--ESSDL 324

Query: 285 AKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAY 344
            +  +G     ++   ++ +P++  G   +  + AE    AA    E A +   ++ +  
Sbjct: 325 TRLFTGPA-GTWRYAGSVSMPIFDFGRIKAGVEAAEARQRAALAGYEKAVQDAFREAQDA 383

Query: 345 NNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNAR 404
                 + G + A    V + + +L   +  +D G  + ++VLDA R L+D   +L++A+
Sbjct: 384 LVANRKARGVVEAQTTQVTALRRSLHLAKLRYDNGYSSYLEVLDAERSLFDVEISLASAQ 443

Query: 405 YDYILSVLQLRQAIG 419
            D +++V+++ +A+G
Sbjct: 444 RDQLVAVVEVYRALG 458