Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., type I secretion outer membrane protein, TolC family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 71.2 bits (173), Expect = 6e-17
 Identities = 92/411 (22%), Positives = 180/411 (43%), Gaps = 40/411 (9%)

Query: 9   VSAALGTLSSAVWAE----NLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQI 64
           ++A LG L+S V A+     L +      E  P+L +    R AA   V  +R+   P++
Sbjct: 17  LAAVLG-LASGVPAQAQEVTLKDSVVNTLETHPRLKAFQENRQAAEHDVDRARAGWFPRL 75

Query: 65  NLTAGYNINR-SDQAPRES-------DLLSAGINFSQELYQRSSWVS-LDTAEKKARQAD 115
           ++  G  + + +D++ R +       D     +  SQ ++   +  S +D  + K    D
Sbjct: 76  DVRGGVGVEQYNDRSTRATGNENDWYDRSEGSLTLSQTIWDGLATASRVDINKNKLGSVD 135

Query: 116 SQYAATQQGLILRVAKAYFEVLRAQDNLEF----VRAEKAAVGRQLEQTKQRFEVGLSAI 171
           ++     + L L    A+ EVLR ++ +      V+  ++ +G Q E+++    +G +++
Sbjct: 136 NRLIDNAEALGLDAVLAHIEVLRQREIVRLSEINVQQHESILGSQQERSR----MGAASV 191

Query: 172 TDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLA---VLDTKRFAA--SRT 226
           +DV   Q +          A+++LT S  AL ++    Y +L    V +T   A   + T
Sbjct: 192 SDVTQTQGRL-------ARAQSTLTESRSAL-QVAEAAYLRLTGKIVPETLGPAEVPTAT 243

Query: 227 TESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAK 286
             S++A +  +Q  N  + A       +   I LA SG+ P +  + G  Y     D  +
Sbjct: 244 PPSADAALADSQSSNPKVQALISDVRTSEAEIDLAKSGYHPVIYAEVGPTY----KDQVE 299

Query: 287 NTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNN 346
           ++   E+    + + +   L+ GG   +  K A      + Q+L+     + ++ RA   
Sbjct: 300 SSRDHEWGTAAM-LRMSWNLFNGGADMAAVKGASARSRQSRQELQNQIDELGRETRATWT 358

Query: 347 NINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDAN 397
            + ++    R +  A+       +A    F VG R+++DVLDA   LY ++
Sbjct: 359 QMLSAREQQRYFLSAIDYNVQTRDAYMQQFLVGQRSLLDVLDAENELYSSS 409