Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., agglutination protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.6 bits (218), Expect = 4e-22
 Identities = 97/440 (22%), Positives = 174/440 (39%), Gaps = 29/440 (6%)

Query: 5   LPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQI 64
           + + +SA L  LS+   ++ L +      + +P L     +  A  E V  + +  +P +
Sbjct: 14  IAVLLSAILLPLSAQ--SQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTV 71

Query: 65  NLTAGYNINRSDQAPR---------------ESDLLSAGINFSQELYQRSSWVSLDTAEK 109
           +LT GY   ++D                   E +    GI+  Q L+    + S +    
Sbjct: 72  DLTGGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFD-GFYTSSEVDRY 130

Query: 110 KARQADSQYA--ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVG 167
               +  Q+A  A  + + L V+KAY   LR  + L+       +     +Q KQR + G
Sbjct: 131 SFEASADQWALLAAAEDMALDVSKAYLNYLRTDEVLKLAEKNLNSHKEIYDQIKQRTDSG 190

Query: 168 LSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTT 227
           L +  D+     +     A+ + A N+L ++      +   +   L           +  
Sbjct: 191 LGSTADLSQISGRLARANANVISARNNLLDAKAQFVRVVAADPVDLIQPVPDADMLPKDL 250

Query: 228 ESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLP--SLTLDGGYNYGNNSNDN- 284
            SS   I  A++ +  L +A      A +  S   + + P  SL L+G +N      D  
Sbjct: 251 NSS---IADAEKNHPILKSAANDIRAAENERSSTQANYYPQVSLELNGSWNNDVGGEDGV 307

Query: 285 ---AKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDV 341
              A    G   ND    V +K  L+ GG   +  K++ +    A +  + A R VV+ V
Sbjct: 308 SAIASQNVGGYSNDIVAMVRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEGV 367

Query: 342 RAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLS 401
               N         +     VI+AK    A    F++G R+++D+LD    L++A K+  
Sbjct: 368 NLAWNAYEMLAPQKQYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDYL 427

Query: 402 NARYDYILSVLQLRQAIGTL 421
            A YD  ++  ++  + G L
Sbjct: 428 QAEYDETIAKYRVLNSTGRL 447



 Score = 25.4 bits (54), Expect = 0.004
 Identities = 44/213 (20%), Positives = 84/213 (39%), Gaps = 19/213 (8%)

Query: 32  AKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAGYNINRSDQAPRESDLLSAGIN- 90
           A++N P L S A    AA    +S+++   PQ++L    + N +D    +     A  N 
Sbjct: 257 AEKNHPILKSAANDIRAAENERSSTQANYYPQVSLELNGSWN-NDVGGEDGVSAIASQNV 315

Query: 91  --FSQELYQ--RSSWVSLDTAEKKARQADSQYAATQQGLI-----------LRVAKAYFE 135
             +S ++    R  +      +  AR+ +S Y  ++   I           + +A   +E
Sbjct: 316 GGYSNDIVAMVRVKYNLFAGGKDLAREKESAYKLSEAKEIRQRAQREVVEGVNLAWNAYE 375

Query: 136 VLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSL 195
           +L  Q   +++R    A         Q+F +G  ++ D+ D + +      D + AE   
Sbjct: 376 MLAPQK--QYIRDHVIAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDYLQAEYDE 433

Query: 196 TNSYEALREITGQEYSKLAVLDTKRFAASRTTE 228
           T +   +   TG+    L V   + +   R  E
Sbjct: 434 TIAKYRVLNSTGRLLDSLKVTRPEAWRGERNYE 466