Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 435 a.a., outer membrane protein TolC (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  405 bits (1040), Expect = e-117
 Identities = 221/434 (50%), Positives = 301/434 (69%), Gaps = 6/434 (1%)

Query: 3   KLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLP 62
           K+  L V+  L   + AV A++L +IY QA  NDP +L   AQR+A FE +  +R+ LLP
Sbjct: 4   KIRSLCVALTLAASAHAVQADDLLQIYQQALTNDPLVLQAQAQRNALFEKIEQNRAPLLP 63

Query: 63  QINLTAGYNINRSDQAPRE-SDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQYAAT 121
            I+   GY+   +D  PR+ S  L+  +  +Q +Y  S+WV L  AEK A QADS YA+ 
Sbjct: 64  TISANVGYDKAWND--PRDDSSGLTGSLKLNQVIYDHSAWVGLSLAEKAASQADSTYASA 121

Query: 122 QQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQF 181
            Q LI RV KAYF+VL A+DN EF  AEK A+ RQLEQTKQRF VGL+AITDVH+AQAQ+
Sbjct: 122 LQNLISRVTKAYFDVLTAKDNYEFQGAEKRAIERQLEQTKQRFAVGLTAITDVHEAQAQY 181

Query: 182 DGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAA-SRTTESSEALIEKAQQQ 240
           D   A E+LAEN+L NSYEALREITG ++  L VLDT RF+A +    SS   ++ A+  
Sbjct: 182 DLASASEILAENTLANSYEALREITGIDHKALNVLDTNRFSAVTPAPSSSTDWLKIAETN 241

Query: 241 NLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGV 300
           ++ L+  RI +D+A++ ISL  +GH+PSL+L+ GY  G        + S  ++++  +G+
Sbjct: 242 SVDLMTQRIGKDIAQETISLYKAGHMPSLSLNAGYAKG--LEQKLGDASEPDFDNMSVGI 299

Query: 301 NLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQ 360
           NL VP++ G   +S  K+A+F YV AS+ LE  YR VVK+VR   NN+ ASI ++RAYEQ
Sbjct: 300 NLSVPIFEGFKVSSQVKEAQFQYVQASERLEQTYRGVVKNVRNNYNNVGASISSIRAYEQ 359

Query: 361 AVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGT 420
           +VIS++SAL+AT+AGF+VGTRTIVDVL+ TR LYD+ + LS+ARY YI S++ L+QA GT
Sbjct: 360 SVISSESALKATQAGFEVGTRTIVDVLNRTRDLYDSKRKLSDARYSYINSIVALKQAAGT 419

Query: 421 LSEQDVMDVNAGLK 434
           L+E DV+ +N GLK
Sbjct: 420 LNEDDVIAINNGLK 433