Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 482 a.a., outer membrane channel protein TolC from Klebsiella michiganensis M5al

 Score =  376 bits (966), Expect = e-109
 Identities = 203/433 (46%), Positives = 288/433 (66%), Gaps = 4/433 (0%)

Query: 1   MKKLLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSAL 60
           MKKL P+ +   L   S+   AENL ++Y QA+ ++P L   AA RDAAFE +  +RS L
Sbjct: 1   MKKLFPILIGLGLTGFSAMSQAENLLQVYQQARISNPDLRKSAADRDAAFEKINEARSPL 60

Query: 61  LPQINLTAGYNINRS--DQAPRESDLLSAGINFSQELYQRSSWVSLDTAEKKARQADSQY 118
           LPQ+ L A Y       D   + S++ S  +  +Q L+  S W +L   EK A   D  Y
Sbjct: 61  LPQLGLGADYTYTSGFRDYKDQNSNVTSGSLQLTQVLFDMSKWRALTLQEKNAGIQDVTY 120

Query: 119 AATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQ 178
              QQ LIL  A AYF+VL A D L +  A+K A+ RQL+QT QRF VGL AITDV +A+
Sbjct: 121 QTDQQTLILNTATAYFKVLAAIDTLSYTEAQKQAIYRQLDQTTQRFNVGLVAITDVQNAR 180

Query: 179 AQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQ 238
           +Q+D VLA+EV A NSL N+ E LR++TG  Y +LA L+   F  ++ + +  AL+++A+
Sbjct: 181 SQYDAVLANEVTARNSLDNAVEELRQVTGNYYPELASLNVDGFKTTKPS-AVNALLKEAE 239

Query: 239 QQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGE-EYNDFK 297
            +NLSLL AR+SQD+AR+ I  A  GHLP+L L+      NN    +K+ + + +    K
Sbjct: 240 NRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLNASSGVSNNRYSGSKSLAQDADVGQNK 299

Query: 298 IGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRA 357
           IG++  +PLY GG   S  KQA++ +V AS+ LE+A+RSVV+ VR+  NN+NASI ++ A
Sbjct: 300 IGLSFSLPLYQGGMVNSQVKQAQYNFVGASEQLESAHRSVVQTVRSSFNNVNASISSINA 359

Query: 358 YEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQA 417
           Y+QAV+SA+S+L+A EAG+ VGTRTIVDVLDAT  LY+A + LSNARY+Y+++ L ++ A
Sbjct: 360 YKQAVVSAQSSLDAMEAGYSVGTRTIVDVLDATTTLYNAKQQLSNARYNYLINELNIKSA 419

Query: 418 IGTLSEQDVMDVN 430
           +GTL+EQD++ +N
Sbjct: 420 LGTLNEQDLVALN 432