Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., outer membrane efflux protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  100 bits (249), Expect = 9e-26
 Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 46/441 (10%)

Query: 4   LLPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQ 63
           LL  F SAAL     A    ++A    +A  ++  ++S  A RDAA E   S+R A  P 
Sbjct: 15  LLSGFTSAAL-----AGDDYDMASAVEKALRDNQGVVSSGAARDAAEEGRKSARGAFGPA 69

Query: 64  INLTAGYNINRSDQAP------RESDLLSAGINFSQELYQRSSWVSLDTAEKKARQAD-- 115
           ++ T GY   R D+ P       ++D  +  +   Q L+  + +  L T +K A + D  
Sbjct: 70  LSTTYGYK--RLDEKPVTFGRELDNDTYTWTMGVRQPLF--TGFNILSTYQKAALEKDRK 125

Query: 116 -SQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDV 174
            ++ + T+  L L V +A+   L+AQ ++         +  QL+ T+  ++VGL    DV
Sbjct: 126 EAELSKTRLTLALAVQQAFLTYLKAQQDVRSANDALVRLRDQLKVTQAFYDVGLRPRLDV 185

Query: 175 HDAQAQFDGVLADEVLAENSLT------NSYEALREITGQEYSKLAVLDTKRFAASRTTE 228
             A+        D + AEN+L       N+  AL   T   +S    L+ + F     T 
Sbjct: 186 LQAEVDLSKAETDFIKAENALDTQKARLNTLLALPVETASSFS--GTLEYRPF-----TR 238

Query: 229 SSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNY---GNNSNDNA 285
             EA +E+A +Q   +  A  + ++A  + ++ASSG+ P ++   G+++   G++   + 
Sbjct: 239 PFEACLEQAYRQRPDMHMAAKAIEIAGKDTTIASSGYYPQVS--AGFDWATQGDHPEASG 296

Query: 286 KNTSGEEYNDFKIGVNLKVPLYTGGNT---TSLTKQAEFAYVAASQDL--EAAYRSVVKD 340
                  Y  +   V   + ++  G T       KQ E    A   +L  E AY  V   
Sbjct: 297 STLDRTGYTQWSTNVTASMNVFEWGRTYYGVQQAKQIESKVRADEANLRQEIAYE-VKSR 355

Query: 341 VRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNL 400
           + A + +    + A +A +QA  + + AL   +A   VGT T  DVLDA  +L  A   L
Sbjct: 356 LLAISESGKRIVVAHKALDQAHEAYRMALARYQA--QVGTNT--DVLDAQAKLTAAEAGL 411

Query: 401 SNARYDYILSVLQLRQAIGTL 421
           + A+ DY++++ QL  ++G L
Sbjct: 412 TGAKADYLVALAQLYASLGEL 432