Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., type I secretion outer membrane protein, TolC family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  100 bits (248), Expect = 1e-25
 Identities = 110/421 (26%), Positives = 176/421 (41%), Gaps = 28/421 (6%)

Query: 10  SAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQINLTAG 69
           +A L   S A  A++L +      +N   +    A   +A E V  + S L P +N +A 
Sbjct: 13  AAVLCAASGAAMAQSLTDALVDTYKNSELIEQSRALLRSADEDVAIAVSRLRPILNYSAD 72

Query: 70  YNINRSDQAPRESDLLSAGINFSQELYQRS-SWVSLDTAEKKARQADSQYAATQQGLILR 128
           Y    SD   RE+D  S GI  S  L+    + + ++  ++          AT+Q ++L 
Sbjct: 73  YGY--SDNFGRETDNGSLGITASLLLFDFGRTRLGIEANKELVLATREALRATEQDVLLE 130

Query: 129 VAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADE 188
              A+  V  A DN++  R     +  QL   + RFEVG    TDV  A+A+     A+ 
Sbjct: 131 GVSAFLNVRGANDNVDLRRNNVRVITEQLRAARDRFEVGEVTRTDVAQAEARLAEANANL 190

Query: 189 VLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAAR 248
             A      + E  R + GQ    LA       A   T E + ++ E+      S+L  R
Sbjct: 191 TRALGQQAAAREVYRAVVGQFPQSLAPPPPSP-AIPATVEEATSIAERTHP---SILQGR 246

Query: 249 ISQDVARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYT 308
            +   +     +A    LP  T     N   +  D+  +T+     D  IG+ L  P+Y 
Sbjct: 247 HNVRASEIVAEVAQKAILP--TASATANISRSIRDSLDDTT-----DSSIGLTLSGPIYQ 299

Query: 309 GGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSA 368
           GG  ++  +QA    +A  ++  A     V  +R       A I   RA    + S +  
Sbjct: 300 GGGLSAQYRQA----LAGVENARATLNQSVLVIRQRVGIAWAEILVTRA---NIDSTRRQ 352

Query: 369 LEATEAGFD-------VGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIGTL 421
           +EA E  F+       +G RT +DVLDA + + DA   L +A    + +V  L  A+G +
Sbjct: 353 VEAAEIAFEGVTEEARLGARTTLDVLDAEQDVLDARTALLSAEISAVQAVYDLLSAMGLM 412

Query: 422 S 422
           +
Sbjct: 413 T 413