Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 448 a.a., outer membrane efflux protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 67/341 (19%), Positives = 147/341 (43%), Gaps = 14/341 (4%)

Query: 86  SAGINFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEF 145
           +AG++ +  L+  + + ++   +     A  +  A++  LI +V KAY++++ AQD+ E 
Sbjct: 113 NAGLSINLPLFAPAVYRAMSMTKTDIELAVEKSRASELDLINQVTKAYYQLMLAQDSYEV 172

Query: 146 VRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREI 205
           ++               +++ G  +  D   A+ Q   +  + + A N++T +   L+ +
Sbjct: 173 LQGSYKLAEDNFNVVNAKYQQGAVSEFDKISAEVQMRSIKPNVISAANAVTLAKLQLKVL 232

Query: 206 TG-------QEYSKLAVLDTKRFAASRTTESSEALIEKAQQQNLSLLAARISQDVARDNI 258
            G       +    L   ++  FA     E      + + + N ++    ++  +   N+
Sbjct: 233 MGITADVDIKTDDNLTNYESMLFANQLKEE------DMSLENNTTMKQFELNMKLLEKNV 286

Query: 259 SLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQ 318
               +  +P+L++   Y Y +  N N         N   +  NL +PLY   N T + K 
Sbjct: 287 KSLKTNFMPTLSMSFSYQYQSLYNPNINFFDYTWSNSSSLMFNLSIPLYRASNFTKV-KS 345

Query: 319 AEFAYVAASQDLEAAYRSVVKDVRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDV 378
           A         +     R +   V +Y NN+ AS   + + ++ V+ A+ A++     ++V
Sbjct: 346 ARIQMRQLDWNRIDTERKLNMQVVSYRNNMTASSEQVVSNKENVMQAEKAVQIAGKRYEV 405

Query: 379 GTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIG 419
           G  T++++  +   L  A    + + YDY+++   L Q +G
Sbjct: 406 GKGTVLELNSSQVSLTQAQLTYNQSIYDYLVAKADLDQVLG 446