Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., outer membrane protein oprM precursor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 87.4 bits (215), Expect = 8e-22
 Identities = 101/411 (24%), Positives = 176/411 (42%), Gaps = 34/411 (8%)

Query: 25  LAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQIN--LTAGYNI-NRSDQAPRE 81
           L  + ++A +++  +L  AA+          S +ALLP I   +TA   + N    A ++
Sbjct: 60  LRSLIDRALDHNKDMLIAAARIKEMAAQKRISTAALLPDIKGKVTAERELENHGGDAFKK 119

Query: 82  SDLLSAG--INFSQELYQRSSWVSLDTAEKKARQADSQYAATQQGLILRVAKAYFEVLRA 139
           SD   A   +++  +L+    W    +  +  +  ++Q  A Q  ++  VA+AY+E++  
Sbjct: 120 SDTFEAQFLVSWELDLWGNLRWARSASIAEYLQSVEAQ-RALQMTIVAEVAQAYYELVAL 178

Query: 140 QDNLEFVRAEKAAVGRQLEQTKQRFEVGLSAITDVHDAQAQFDGVLADEVLAENSLTNSY 199
              L+ V+    A    +   + RFE GL++ T    AQ +           E  ++   
Sbjct: 179 DTELDIVKQTLKAREEGVRLARIRFEGGLTSETSYRQAQVELARTATLVPDLERKISLKE 238

Query: 200 EALREITGQEYSKLA---VLDTKRFAASRTTESSEALIEKA---QQQNLSLLAARISQDV 253
             +  + G+  +++A   +L    F  +        L+E+    +Q    L+AA     V
Sbjct: 239 NDIAFLAGEYPNRIARSRLLQEFNFPETLPIGMPSTLLERRPDIRQAEQKLIAANAKVGV 298

Query: 254 ARDNISLASSGHLPSLTLDGGYNYGNNSNDNAKNTSGEEYNDFKIGVN---LKVPLYTGG 310
           A  N+        P L L GG+         +++TS  E       V    L  P++  G
Sbjct: 299 AYTNM-------FPRLALTGGFG--------SESTSLSELLKSPYAVMEGALLTPIFGWG 343

Query: 311 NTTSLTKQAEFAYVAASQDLEAAYRSVVKDVRAYNNNINA--SIGALRAYEQAVISAKSA 368
              +  K  + AY A     E    +  K+ R    N N    + ALRA  +   SAKS 
Sbjct: 344 KNRAALKGKKAAYEAEIHSYEKTVLTAFKETRNAIVNFNKIKEVYALRANLER--SAKSY 401

Query: 369 LEATEAGFDVGTRTIVDVLDATRRLYDANKNLSNARYDYILSVLQLRQAIG 419
           ++  +  +  G    +DVLDA R  +DA   LSNA  D +++V+QL +A+G
Sbjct: 402 MDLAQLQYINGVINYLDVLDAQRGYFDAQIGLSNAIRDELITVVQLYKALG 452