Pairwise Alignments

Query, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., TolC family type I secretion outer membrane protein (RefSeq) from Shewanella sp. ANA-3

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 95/441 (21%), Positives = 176/441 (39%), Gaps = 31/441 (7%)

Query: 5   LPLFVSAALGTLSSAVWAENLAEIYNQAKENDPQLLSVAAQRDAAFEAVTSSRSALLPQI 64
           + + +SA L  LS+   ++ L +      + +P L     +  A  E V  + +  +P +
Sbjct: 14  IAVLLSAILLPLSAQ--SQTLEQAVAHTLDTNPDLRVAFNRFKAREEQVNQAIAGYMPTV 71

Query: 65  NLTAGYNINRSDQAPR---------------ESDLLSAGINFSQELYQRSSWVSLDTAEK 109
           ++T GY   ++D                   E +    GI+  Q L+    + S +    
Sbjct: 72  DITGGYGYEQTDSVSTRRRKNVGDVDSNGVAELNRGEFGISLKQMLFD-GFYTSSEVDRY 130

Query: 110 KARQADSQYA--ATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVG 167
               +  Q+A  A  + + L V+K Y   LR  + L+       +     EQ KQR + G
Sbjct: 131 SFEASADQWALLAAAEDMALDVSKVYLNYLRTDEVLKLAEKNLNSHKDIYEQIKQRTDSG 190

Query: 168 LSAITDVHDAQAQFDGVLADEVLAENSLTNSY-EALREITGQEYSKLAVLDTKRFAASRT 226
           L +  D+     +     A+ + A N+L ++  + +R I       +  +      A   
Sbjct: 191 LGSTADLSQITGRLARANANVISARNNLLDAKAQFIRVIAADPVDLIQPVPD----ADLL 246

Query: 227 TESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLP--SLTLDGGYNYGNNSNDN 284
            +   + +  AQ+ +  L +A      A +  S   + + P  SL L+G +N      D 
Sbjct: 247 PKDLNSGLTDAQENHPILKSAANDIRAAENERSSVQASYYPQVSLELNGNWNNDVGGEDG 306

Query: 285 ----AKNTSGEEYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKD 340
               A    G   ND    V ++  L+ GG   +  K+  +    A +  + A R VV+ 
Sbjct: 307 VSALASQNVGGYNNDLVAMVRVRYNLFAGGKDLAREKETAYKLGEAKEIRQRAQREVVEG 366

Query: 341 VRAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNL 400
           V    N         +     V++AK    A    F++G R+++D+LD    L++A K+ 
Sbjct: 367 VNLAWNAYEMLAPQKQYIRDHVMAAKDTQSAYAQQFNLGQRSLLDLLDTENELFEARKDY 426

Query: 401 SNARYDYILSVLQLRQAIGTL 421
             A YD I++  ++  + G L
Sbjct: 427 LQAEYDEIIAKYRVLNSTGRL 447