Pairwise Alignments

Query, 272 a.a., 3',5'-cyclic-AMP phosphodiesterase from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., lacZ expression regulator (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  247 bits (630), Expect = 2e-70
 Identities = 122/274 (44%), Positives = 175/274 (63%), Gaps = 5/274 (1%)

Query: 3   VSSQSEDSSIKLIQITDTHLFAAEDGSLLSVNTADSFAAVVAAIGEEQVEFDAILATGDI 62
           +S    D S++++Q+TD HLFA  +  LL VNT+ S AAV+  I         +LATGD+
Sbjct: 6   ISYSIADESVRIVQVTDPHLFADPEAQLLGVNTSKSLAAVLNTIRAVNYPAHLLLATGDL 65

Query: 63  SQDHTPESYQRFVRGIQPLKKACYWLPGNHDYKPSMHSVLPTQQIQAVEHVLLGEHWQVV 122
           SQD++PESY++FV  + PL   C++LPGNHD    M   +  +++   + +L+G+ WQ++
Sbjct: 66  SQDYSPESYRQFVSAVAPLNLPCHYLPGNHDDPRIMFLHMQGERVFGQQRILVGK-WQIL 124

Query: 123 LLDSQVVGVPHGKLSEQQLQLLDNKLTEYPERHTLVLLHHHPLLVGSAWLDQHTLKESER 182
           +LDS V G P G + E Q +L++  +  +PE HTL+++HH+P+LV  AWLDQH +     
Sbjct: 125 MLDSTVRGKPGGHMGEGQFELIEQAIAAHPEHHTLLVMHHNPILVNCAWLDQHCMDNGAE 184

Query: 183 FWDVVAKHSNVKAILCGHVHQDMDRI----HLGARVMATPSTCVQFKPNSQDFALDNCSP 238
           F   VA++  VKA+L GHVHQ +D      H   ++MATPSTC+QFKP S  FALD   P
Sbjct: 185 FLRRVAQYPQVKALLWGHVHQQLDTYYDGPHRALQLMATPSTCIQFKPQSPYFALDGLQP 244

Query: 239 GWRELTLHADGQVSTQVKRLKQGRFLPDFNSNGY 272
           G+R L L ADG +ST V R+    F PD +S+GY
Sbjct: 245 GYRLLELKADGSISTNVYRVPGNLFSPDKDSSGY 278