Pairwise Alignments

Query, 626 a.a., DNA topoisomerase IV subunit B from Vibrio cholerae E7946 ATCC 55056

Subject, 792 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Pseudomonas fluorescens FW300-N2E2

 Score =  364 bits (935), Expect = e-105
 Identities = 218/564 (38%), Positives = 323/564 (57%), Gaps = 23/564 (4%)

Query: 12  VLNGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGYASKIQVILHADQSLEV 67
           VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAG+   I +I+H D+S+ V
Sbjct: 1   VLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISIIIHPDESITV 60

Query: 68  IDDGRGMPVDIHPEEKVSGVELILCKLHAGGKFSNKNYQFSGGLHGVGISVVNALSKRVE 127
            D+GRG+PVD+H EE VS  E+I+  LHAGGKF + +Y+ SGGLHGVG+SVVNALS+ + 
Sbjct: 61  RDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSEELV 120

Query: 128 VAVRRDGQVYEIAFEHGDKVTELTVTGTCGRRNTGTSVHFWPDTKYFDSPNFSVSRLINN 187
           + VRR G+++E  + HG     + + G      TGT +HF   ++ F + +FS   L   
Sbjct: 121 LTVRRSGKIWEQTYIHGVPQAPMAIVG--DSETTGTQIHFKASSETFKNIHFSWDILAKR 178

Query: 188 LRAKAVLCPGLEIIFTDKVNNNEHRWLYEDGLKDYLAEGVKGYTLLPEEPFTG--EFTAQ 245
           +R  + L  G+ I+  D+ +  E  + YE GL+ ++      Y    + P      F  Q
Sbjct: 179 IRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVE-----YLNTNKTPVNQVFHFNVQ 233

Query: 246 TE---AATWAVIWLPEGGELITESYVNLIPTAQGGTHVNGLRQGLLDAMREFCEFRNLLP 302
            E       A+ W     E +   + N IP   GGTH+ G R  L   +  + E   L  
Sbjct: 234 REDGIGVEIALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSALTRNLNNYIEQEGLAK 292

Query: 303 R-GVKLTGEDVFDRCAYVLSIKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFSLWLNEK 361
           +  V  TG+D  +    ++S+K+ DP+F+ QTK++L S +    V   +   FS +L E 
Sbjct: 293 KHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFSDFLLEN 352

Query: 362 PQLAEQLAEVCI--ANAHSRMRASKKVVRKKIASGPA-LPGKLTDCTVQDLNRTELFLVE 418
           P  A+ +    I  A A    R ++++ R+K A   A LPGKL DC  +D   +EL+LVE
Sbjct: 353 PNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYLVE 412

Query: 419 GDSAGGSAKQARDREFQAVMPLRGKILNTWEVSADQVLASQEVHDISVAL--GIDPDSDN 476
           GDSAGGSAKQ R+R  QA++PL+GKILN  +   D++++SQEV  +  AL  GI  +  N
Sbjct: 413 GDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIGREEYN 472

Query: 477 LEALRYGKVCILADADSDGLHIATLLCALFTRHFRALVKAGHVYVAMPPLYRIDCGKEVF 536
           ++ LRY  + I+ DAD DG HI TLL   F R    L++ G++Y+A PPLY++  GK+  
Sbjct: 473 IDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYKVKKGKQEQ 532

Query: 537 YALDDQEKEGVLERLSQKKAKVNV 560
           Y  DD   E  + + + + A +++
Sbjct: 533 YIKDDDAMEEYMTQSALEDASLHL 556



 Score = 66.2 bits (160), Expect = 5e-15
 Identities = 32/77 (41%), Positives = 53/77 (68%), Gaps = 1/77 (1%)

Query: 544 KEGVLERLSQKKAKVNVQRFKGLGEMNPLQLRETTMDPNTRRLVQLTIDDAEATDEMMDM 603
           KE +   +++   +  +QR+KGLGEMNP QL ETTMDP +RR++++TI+DA   D++ + 
Sbjct: 708 KEALEWLMAESTKRHTIQRYKGLGEMNPDQLWETTMDPGSRRMLKVTIEDAIGADQIFNT 767

Query: 604 LLGKKRADDRRAWLQRN 620
           L+G    + RR +++ N
Sbjct: 768 LMG-DAVEPRRDFIESN 783